Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq511 187 6e-42 seq542 149 1e-30 seq1134 120 7e-22 seq1772 93.3 1e-13 seq918 86.0 1e-11 >seq511 Length=37049 Score = 187 bits (206), Expect = 6e-42 Identities = 214/288 (74%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| ||||||||||| ||| ||| |||||||||||| | ||||| | |||||| | | Sbjct 13308 AACTTTATATTTAATTTTTAGTGCTTTTTCTGGTATTGTTGGTACAACATTTTCACTTTT 13367 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || | | |||||| | || ||| |||||| || | |||||| ||| | || Sbjct 13368 AATTCGTATGGAATTATCACAACCAGGTAATCAAATTTTAATGGGTAATCATCAATTATA 13427 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || || ||| ||||||| ||||| ||| ||||| | || || || |||||||| | | | Sbjct 13428 TAATGTAATTGTTACGGCACATGCTTTTATTATGGTATTTTTCTTAGTTATGCCTGCTTT 13487 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || || || || ||||| || ||||||||||||| |||||||| ||||||||||| Sbjct 13488 AATTGGTGGCTTTGGTAATTGGTTTATTCCTTTAATGATAGGTGCTCCAGATATGGCTTT 13547 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 ||| | | || ||||| |||||||| ||| |||| || || ||||| Sbjct 13548 TCCTCGTATGAATAATATTAGTTTTTGGTTATTACCACCATCATTATT 13595 Score = 132 bits (146), Expect = 1e-25 Identities = 99/116 (85%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||||||||||||||||||| || |||||||| ||||| |||||||| ||||||||||| Sbjct 27672 AATATTTGACCATCAGTAATTGAAATAACATTAGTAGGAATATAAGCTGAAACATCACCA 27613 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | || |||||| || |||| || |||||||||| |||||||| Sbjct 27612 GCTTGAGTTTCAATAATAGGTAATGCAGTTAAAGAACCACCACCAATTTTTTTATT 27557 Score = 109 bits (120), Expect = 1e-18 Identities = 101/125 (81%), Gaps = 6/125 (5%) Strand=Plus/Plus Query 6750 AGCCTTTTCCCTTTAACT----TGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGC 6804 ||||| || ||||| || ||| |||||||||||||||||||||||||| | ||||| Sbjct 28573 AGCCTATTATCTTTAGCTGGTTTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGC 28632 Query 6805 CCAAGTCTTCTAAAAGGGCAGCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGA 6864 |||| ||| | || ||||||||||| |||| || ||||||| ||| |||||||||| | Sbjct 28633 CCAA-ACTTTTTTAAAGGCAGCAGTGGGGAATTTTGGACAATGAGCGGAAGCTTGATCCA 28691 Query 6865 GTAAT 6869 | ||| Sbjct 28692 GCAAT 28696 Score = 107 bits (118), Expect = 5e-18 Identities = 87/104 (84%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| |||||||| || |||||||||||||| | | |||||| ||||||||||| Sbjct 13992 TTCTGGATGTCCAAAAAACCAAAATAAATGTTGATATAATACAGGATCACCTCCGCCTGA 13933 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 |||||| |||| ||||| ||||||||||||||||| |||| Sbjct 13932 AGGATCATAAAATGATGTATTTAAATTTCTATCAGTTAATAACA 13889 Score = 96.9 bits (106), Expect = 8e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 ||||||| || ||||| |||| ||||||||||| ||||||| ||||||| ||||| | Sbjct 9198 TAGGTGTCACTAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATG 9257 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | ||||||||||||||||||| Sbjct 9258 GTAACATGATGTATAGGGTCTGACAC 9283 Score = 95.1 bits (104), Expect = 3e-14 Identities = 131/182 (72%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | ||| || || ||||||||||| | || || | |||||| Sbjct 13814 AAAGGTAATCTATGAAAACTTAAGCCTGGAGCTCTCATATTATAAATAGTTGAAATAAAA 13755 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| |||| || ||||| || || | | |||||||||||| || |||||||| Sbjct 13754 TTAATAGCACCTAACAGTGAAGACATTCCGGATAAATGTAAACTAAAAATAGCTAAATCT 13695 Query 371485 ACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || ||| || || || || |||| | || ||| || || |||||||| || || Sbjct 13694 ACCGAAGGTCCTGAATGTGCTTGTACACTTGA---TAAAGGTGGATAAACTGTCCAACCT 13638 Query 371542 GT 371543 || Sbjct 13637 GT 13636 Score = 95.1 bits (104), Expect = 3e-14 Identities = 101/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 29260 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 29201 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| | |||||| | || | ||||| ||| | || Sbjct 29200 GACTCCCGTCAATTCCTTTGAATTTCGATCTTGCGATTATACTTTTCAGGCGGAGTGCTT 29141 Query 7850 TACGCGTTAGCT 7861 ||||||||||| Sbjct 29140 AACGCGTTAGCT 29129 >seq542 Length=20326 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| ||||| ||| || || | || || Sbjct 4 AGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 63 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| ||||| || |||||||||||| Sbjct 64 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCT 123 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||||||||| ||||| | ||| || | |||||||| | |||||| ||| Sbjct 124 TGGATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTC 183 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||| || || | ||| | ||||| Sbjct 184 TTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 215 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| ||||| ||| || || | || || Sbjct 232 AGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 291 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| ||||| || |||||||||||| Sbjct 292 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCT 351 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||||||||| ||||| | ||| || | |||||||| | |||||| ||| Sbjct 352 TGGATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTC 411 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||| || || | ||| | ||||| Sbjct 412 TTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 443 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| ||||| ||| || || | || || Sbjct 4976 AGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 4917 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| ||||| || |||||||||||| Sbjct 4916 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCT 4857 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||||||||| ||||| | ||| || | |||||||| | |||||| ||| Sbjct 4856 TGGATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTC 4797 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||| || || | ||| | ||||| Sbjct 4796 TTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 4765 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| ||||| ||| || || | || || Sbjct 5204 AGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 5145 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| ||||| || |||||||||||| Sbjct 5144 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCT 5085 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||||||||| ||||| | ||| || | |||||||| | |||||| ||| Sbjct 5084 TGGATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTC 5025 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||| || || | ||| | ||||| Sbjct 5024 TTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 4993 Score = 145 bits (160), Expect = 2e-29 Identities = 146/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| ||||| ||| || || | || || Sbjct 460 AGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 519 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| ||||| || |||||||||||| Sbjct 520 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCT 579 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||||||||| ||||| | ||| || | |||||||| | |||||| ||| Sbjct 580 TGGATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTC 639 Query 225682 TTGCCCGTCA 225691 |||||||||| Sbjct 640 TTGCCCGTCA 649 Score = 145 bits (160), Expect = 2e-29 Identities = 146/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| ||||| ||| || || | || || Sbjct 4748 AGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 4689 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| ||||| || |||||||||||| Sbjct 4688 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCT 4629 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||||||||| ||||| | ||| || | |||||||| | |||||| ||| Sbjct 4628 TGGATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTC 4569 Query 225682 TTGCCCGTCA 225691 |||||||||| Sbjct 4568 TTGCCCGTCA 4559 >seq1134 Length=11309 Score = 120 bits (132), Expect = 7e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || ||||| |||||||| || ||| Sbjct 8637 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCC 8578 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| ||||| || ||||| ||| || ||| |||| || | |||||||| | |||| Sbjct 8577 TTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTG 8518 Query 225676 ATCGTCTTGCCCGTCA 225691 || ||||||||||||| Sbjct 8517 ATGGTCTTGCCCGTCA 8502 >seq1772 Length=15272 Score = 93.3 bits (102), Expect = 1e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || ||||| || || || || || |||| ||||| ||| || || Sbjct 15139 ACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 15198 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||| ||||| || || Sbjct 15199 GCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCC 15258 Query 225612 TTCCTTGTCTTGGA 225625 |||||||||||||| Sbjct 15259 TTCCTTGTCTTGGA 15272 >seq918 Length=42645 Score = 86.0 bits (94), Expect = 1e-11 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 193523 GGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCCGCTTGAGCGACGAGAAT-GTGAT 193581 |||||| ||||| | ||||| |||| |||| ||| || ||| | ||||| | || Sbjct 40591 GGCGTCCTTGTATAACATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAA 40650 Query 193582 GCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTTCCTTCCCTCTCGTACTTTTCGT 193641 ||| || | |||||| || | |||| | | ||| ||||| | ||||||||| || Sbjct 40651 -CCACAGCTGTTGAGCATTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAA 40709 Query 193642 ACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGACCGGGAGCTTCCTTTGGGCAAA 193701 |||| ||| || || | ||| || |||| ||||||||||| || || || || | Sbjct 40710 ACAGCGTCTCGAACTCCTCTCCCCAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGA 40769 Query 193702 AGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATGAAGAGGTC 193747 | | |||||| | |||| ||||| | ||||||||| || || Sbjct 40770 ACAAACTCCACTTGCCATTGGCCTCCACACGCTTCATGAATAGATC 40815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192494193520868