Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1680 152 4e-32 >seq1680 Length=186158 Score = 152 bits (168), Expect = 4e-32 Identities = 448/679 (66%), Gaps = 25/679 (4%) Strand=Plus/Minus Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189 ||||| ||| ||||| || | ||| | |||||| ||||| || || || | ||||| Sbjct 180721 AGCTGCTTCTGAAGCGGCTCTATGTGGTTCAGGTATACGTGTGCATCACCAATAATGTGG 180662 Query 27190 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA-CGTGAGGAGAGAGTA 27248 | ||| || || | || | || | || || |||| || || ||| || || | || Sbjct 180661 ATAAATTCGCCAGATTTCAAACCAGCCACTTGGGCCA-CAAGTCGCGTCAGTAGCGCATA 180603 Query 27249 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 27308 ||||||||||| || || || ||||| |||||||| | || | |||||| | || || Sbjct 180602 ACTGGCGATGTTGAACGGCACGCCGAGGCCCATGTCAGCTGAACGCTGGTACATTTGGCA 180543 Query 27309 CGAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCAT 27368 ||| | || ||||| |||||||||||||| | ||| || || || || ||||| Sbjct 180542 CGACAATTCGCCATCCGCCACGTAAAACTGACAAAACATGTGACATGGTGGCAGCGCCAT 180483 Query 27369 GAGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGT 27424 | || || ||| || ||||| || ||| | || || | ||| |||| Sbjct 180482 ----CTCATTGAGATCTGCCGGATTCCACGCAGACAACACAATCCGACGGTCGGTCGGGT 180427 Query 27425 TGTTCCTGA---TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAG 27480 | | | | || || ||| | || || ||||||||||| || | |||| Sbjct 180426 TCGTGCGCAATTTGTGGATCAC----CTCAGCAAGTTGATCCACCCCTTGTCCAGTGTAG 180371 Query 27481 TCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGT 27540 ||| | ||| |||||||||| ||||| || || | ||| ||||| || || || ||| Sbjct 180370 TCTGCATGCATATCCGTGTACTTGGCTCCAAAGTGACGCCACTGGAATCCATAAACTGGT 180311 Query 27541 CCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCG 27600 ||||||||||| ||||||| || | || | |||||||| | |||| || || Sbjct 180310 CCCAGGTCTCCTACTTCCCTTGACTGCAGTCCACAACTGTCCAAATACTCTCGCGATCCA 180251 Query 27601 TTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTG 27660 ||| | |||||||| | | |||||| ||| | | | || ||| || Sbjct 180250 TTGCCATCCCAGATATGAATGTCCTTCTGCTGCAGCGTATGCGCACTCGTATCCCCACTA 180191 Query 27661 ACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGG 27720 | ||||||||| | |||||| | || | |||| || || ||||| ||||| | | Sbjct 180190 ATGAACCACAGTAATTCCTCCGCCACACCTCTCCAGAATACTCTCTTAGTCGTCAACAAT 180131 Query 27721 GGAAAC----TGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCC 27776 || ||| | |||| | || | | | | ||||| |||||||| ||||| | ||| Sbjct 180130 GGGAACACGTTATCCC-TCAGACTGAAGCGCATCTGAGCCCCAAACACCGACAA-AGTCC 180073 Query 27777 C-GTGCCCGTCCTGTCTCC 27794 | || ||||||| |||||| Sbjct 180072 CTGTCCCCGTCCGGTCTCC 180054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369496292840282