Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq542 179 8e-40 seq1134 154 3e-32 seq160 105 1e-17 seq1371 104 5e-17 seq1772 102 2e-16 seq321 96.9 7e-15 >seq542 Length=20326 Score = 179 bits (198), Expect = 8e-40 Identities = 178/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||||||||| ||||| || | || || || |||||||||||||| Sbjct 217 CCACCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 276 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 277 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 336 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||||||||| || ||| || || | ||||| | |||||||| || || Sbjct 337 ATGCCTTCCTTGTCTTGGATTTTCTGC-TTCACATTGTCGATCGAGTCCGAAGGCTCCAC 395 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| ||||||| ||||| ||||| |||||||| Sbjct 396 GTCGAGCGTGATGGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 443 Score = 179 bits (198), Expect = 8e-40 Identities = 178/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||||||||| ||||| || | || || || |||||||||||||| Sbjct 4991 CCACCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 4932 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 4931 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 4872 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||||||||| || ||| || || | ||||| | |||||||| || || Sbjct 4871 ATGCCTTCCTTGTCTTGGATTTTCTGC-TTCACATTGTCGATCGAGTCCGAAGGCTCCAC 4813 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| ||||||| ||||| ||||| |||||||| Sbjct 4812 GTCGAGCGTGATGGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 4765 Score = 176 bits (194), Expect = 9e-39 Identities = 179/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||||||||| ||||| || | || || || |||||||||||||| Sbjct 445 CCACCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 504 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 505 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 564 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||||||||| || ||| || || | ||||| | |||||||| || || Sbjct 565 ATGCCTTCCTTGTCTTGGATTTTCTGC-TTCACATTGTCGATCGAGTCCGAAGGCTCCAC 623 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| ||||| ||||| ||||||| ||||| || || |||||||| || Sbjct 624 GTCGAGCGTGATGGTCTTGCCCGTCAGTGTCTTCACAAAGATCTGCATCTT 674 Score = 176 bits (194), Expect = 9e-39 Identities = 179/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||||||||| ||||| || | || || || |||||||||||||| Sbjct 4763 CCACCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 4704 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 4703 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 4644 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||||||||| || ||| || || | ||||| | |||||||| || || Sbjct 4643 ATGCCTTCCTTGTCTTGGATTTTCTGC-TTCACATTGTCGATCGAGTCCGAAGGCTCCAC 4585 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| ||||| ||||| ||||||| ||||| || || |||||||| || Sbjct 4584 GTCGAGCGTGATGGTCTTGCCCGTCAGTGTCTTCACAAAGATCTGCATCTT 4534 Score = 176 bits (194), Expect = 9e-39 Identities = 178/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| |||||||||||||| ||||| || | || || || |||||||||||||| Sbjct 5220 ACCGCCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 5161 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||||| || ||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 5160 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 5101 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || || |||||||||||||| || ||| || || | ||||| | |||||||| || | Sbjct 5100 GATGCCTTCCTTGTCTTGGATTTTCTGC-TTCACATTGTCGATCGAGTCCGAAGGCTCCA 5042 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | ||||| ||||| ||||| ||||||| ||||| ||||| |||||||| Sbjct 5041 CGTCGAGCGTGATGGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 4993 Score = 158 bits (174), Expect = 3e-33 Identities = 166/216 (77%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 282885 CGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCA 282944 ||||| ||||| || | || || || |||||||||||||| |||||||| || Sbjct 1 CGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCG 60 Query 282945 TCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTG 283004 ||||| || || || ||||| ||||||| ||| || |||||| ||| || || |||||| Sbjct 61 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTG 120 Query 283005 TCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGAT 283063 |||||||| || ||| || || | ||||| | |||||||| || || ||||| ||||| Sbjct 121 TCTTGGATTTTCTGC-TTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGAT 179 Query 283064 CGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||| ||||| ||||| |||||||| Sbjct 180 GGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 215 >seq1134 Length=11309 Score = 154 bits (170), Expect = 3e-32 Identities = 149/189 (79%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||||||||||| ||||| || || || ||||| |||||| Sbjct 8667 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 8608 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | ||| || |||||| |||||| ||||||||||| ||||| || ||| || || | || Sbjct 8607 AGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCTGC-TTGACATTGTC 8549 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||||| | || || ||||| ||||| ||||| ||||||| ||||| || || Sbjct 8548 AATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 8489 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 8488 GATCTGCAT 8480 >seq160 Length=67763 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || ||||| || | |||||| || || |||||||||||||| | Sbjct 8605 ACCACCACGCAGACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGA 8664 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || || ||||||| ||| || |||||| ||| Sbjct 8665 CAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 8724 Query 282992 AATACC 282997 || || Sbjct 8725 GATTCC 8730 >seq1371 Length=52859 Score = 104 bits (114), Expect = 5e-17 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 317025 CGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGC 317084 || |||||| || || | ||| ||||| ||| || | ||| || || ||||| || Sbjct 15326 CGACGGGAAGCCGTCAAGCTGGCCGTTGGAAATGGCGCGCATAAGCGTAGACTTACCGCA 15385 Query 317085 ACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTT 317144 ||| ||||| ||||| ||||| || || | || ||| || || ||||| |||||| Sbjct 15386 ACCGTTGGGACCGCACAGACCGTAACGGTGGCCACGCTTTAGGCGAAGACGGGCGTTGTT 15445 Query 317145 CAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCC 317196 ||| |||||| ||||||| || || || ||||||||||| | || |||||| Sbjct 15446 CAGCAGAATCATACCACCGTAAGCGAGCGAGAACTCACAGTTGCAAAGGTCC 15497 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| ||||| || ||||||| || ||||| |||| ||| ||| || Sbjct 14472 TCCTTGTCCTCACCAGACTGGAAACGCCACTGAATGTAGGCGTTGGCAGTCTCGTCGAGG 14531 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || || || ||||| |||||||||||||| || |||||||| | |||||| || ||| Sbjct 14532 TGCTCTTCAATGTGATGGAAAGCGTGCTGAGCGACGTAAGCGAAACGCATGGAAGGGTGC 14591 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || ||||| || | ||| | || || || |||| || || || || Sbjct 14592 TTCCATACCGTACCGACGGTGGGTTCAACCTCACCCGTCAGCATCTTGATCAGCGTCGAC 14651 Query 316342 TTTCCCGCGCCGTT 316355 || || || ||||| Sbjct 14652 TTACCGGCACCGTT 14665 >seq1772 Length=15272 Score = 102 bits (112), Expect = 2e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| ||||| || | || || || |||||||||||||| Sbjct 15134 CCGCCACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 15193 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 15194 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 15253 Query 282993 ATACCCTCCTTGTCTTGGA 283011 || || ||||||||||||| Sbjct 15254 ATGCCTTCCTTGTCTTGGA 15272 >seq321 Length=97162 Score = 96.9 bits (106), Expect = 7e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 273773 CAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACC 273832 ||| || ||||||||||| | | ||| || ||||| ||||| |||||| | ||| Sbjct 25518 CAGGTTGGTGAAAATGTAACGAGAACTAGCCGCATCCTTACCACCCATCAGCCTTGTACC 25459 Query 273833 AAACTGACCC-TCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCA 273891 ||| ||||| | ||| | ||| || | |||||||| || ||| ||||||| |||| Sbjct 25458 AAATTGACCAATTGGGGA-TAGAAGGTGAACATTGTTGCTTCCAACGAAATCCTGCGCCA 25400 Query 273892 TATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGA 273951 ||||||||||| ||||| | |||| ||||||||||| || ||| || | || Sbjct 25399 TATTCACGATACAGCCCTGCAAACCCGCCTCACCGTGGTGATATGCAGAGTGCTCAGAGA 25340 Query 273952 TATAACCACTGAACTGAGCAACCTT 273976 ||| ||| ||||| || ||||| Sbjct 25339 CATATCCAGCCAACTGTGCTACCTT 25315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046706717719988