Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq542 123 6e-23 seq1134 118 3e-21 >seq542 Length=20326 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||||| ||||| ||||| || ||| Sbjct 212 CAGATCTTCGTGAAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCTTCGGAC 153 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| || || || || || || || ||||| ||||| ||||| || |||||||| Sbjct 152 TCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAGCAG 93 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 92 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 33 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| || || || Sbjct 32 CAGAAGGAGTCTACACTTCACCTGGT 7 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||||| ||||| ||||| || ||| Sbjct 440 CAGATCTTCGTGAAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCTTCGGAC 381 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| || || || || || || || ||||| ||||| ||||| || |||||||| Sbjct 380 TCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAGCAG 321 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 320 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 261 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| || || || Sbjct 260 CAGAAGGAGTCTACACTTCACCTGGT 235 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||||| ||||| ||||| || ||| Sbjct 4768 CAGATCTTCGTGAAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCTTCGGAC 4827 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| || || || || || || || ||||| ||||| ||||| || |||||||| Sbjct 4828 TCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAGCAG 4887 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 4888 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 4947 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| || || || Sbjct 4948 CAGAAGGAGTCTACACTTCACCTGGT 4973 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||||| ||||| ||||| || ||| Sbjct 4996 CAGATCTTCGTGAAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCTTCGGAC 5055 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| || || || || || || || ||||| ||||| ||||| || |||||||| Sbjct 5056 TCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAGCAG 5115 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 5116 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 5175 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| || || || Sbjct 5176 CAGAAGGAGTCTACACTTCACCTGGT 5201 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || ||||| ||||| ||||| || ||| Sbjct 668 CAGATCTTTGTGAAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCTTCGGAC 609 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| || || || || || || || ||||| ||||| ||||| || |||||||| Sbjct 608 TCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAGCAG 549 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 548 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 489 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| || || || Sbjct 488 CAGAAGGAGTCTACACTTCACCTGGT 463 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || ||||| ||||| ||||| || ||| Sbjct 4540 CAGATCTTTGTGAAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCTTCGGAC 4599 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| || || || || || || || ||||| ||||| ||||| || |||||||| Sbjct 4600 TCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAGCAG 4659 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 4660 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 4719 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| || || || Sbjct 4720 CAGAAGGAGTCTACACTTCACCTGGT 4745 >seq1134 Length=11309 Score = 118 bits (130), Expect = 3e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || ||||| ||||| ||||| || ||| Sbjct 8483 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCGGAC 8542 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||| || || ||||| || || || |||||||| || ||||| || || |||||||| Sbjct 8543 AGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATTCCGCCTGACCAGCAG 8602 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || | || || ||| || Sbjct 8603 CGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAACATC 8662 Query 178104 CAAAA 178108 || || Sbjct 8663 CAGAA 8667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203693845963868