Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08-
24] 2,422 sequences; 38,111,184 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq542 123 6e-23
seq1134 118 3e-21
>seq542
Length=20326
Score = 123 bits (136), Expect = 6e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || || || || || || ||||| ||||| ||||| || |||
Sbjct 212 CAGATCTTCGTGAAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCTTCGGAC 153
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| ||||| || || || || || || || ||||| ||||| ||||| || ||||||||
Sbjct 152 TCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAGCAG 93
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||| || || || | || || ||| || ||| ||
Sbjct 92 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 33
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || ||||| || || ||
Sbjct 32 CAGAAGGAGTCTACACTTCACCTGGT 7
Score = 123 bits (136), Expect = 6e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || || || || || || ||||| ||||| ||||| || |||
Sbjct 440 CAGATCTTCGTGAAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCTTCGGAC 381
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| ||||| || || || || || || || ||||| ||||| ||||| || ||||||||
Sbjct 380 TCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAGCAG 321
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||| || || || | || || ||| || ||| ||
Sbjct 320 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 261
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || ||||| || || ||
Sbjct 260 CAGAAGGAGTCTACACTTCACCTGGT 235
Score = 123 bits (136), Expect = 6e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || || || || || || ||||| ||||| ||||| || |||
Sbjct 4768 CAGATCTTCGTGAAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCTTCGGAC 4827
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| ||||| || || || || || || || ||||| ||||| ||||| || ||||||||
Sbjct 4828 TCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAGCAG 4887
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||| || || || | || || ||| || ||| ||
Sbjct 4888 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 4947
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || ||||| || || ||
Sbjct 4948 CAGAAGGAGTCTACACTTCACCTGGT 4973
Score = 123 bits (136), Expect = 6e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || || || || || || ||||| ||||| ||||| || |||
Sbjct 4996 CAGATCTTCGTGAAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCTTCGGAC 5055
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| ||||| || || || || || || || ||||| ||||| ||||| || ||||||||
Sbjct 5056 TCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAGCAG 5115
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||| || || || | || || ||| || ||| ||
Sbjct 5116 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 5175
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || ||||| || || ||
Sbjct 5176 CAGAAGGAGTCTACACTTCACCTGGT 5201
Score = 120 bits (132), Expect = 7e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || ||||| || || || || || || ||||| ||||| ||||| || |||
Sbjct 668 CAGATCTTTGTGAAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCTTCGGAC 609
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| ||||| || || || || || || || ||||| ||||| ||||| || ||||||||
Sbjct 608 TCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAGCAG 549
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||| || || || | || || ||| || ||| ||
Sbjct 548 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 489
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || ||||| || || ||
Sbjct 488 CAGAAGGAGTCTACACTTCACCTGGT 463
Score = 120 bits (132), Expect = 7e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || ||||| || || || || || || ||||| ||||| ||||| || |||
Sbjct 4540 CAGATCTTTGTGAAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCTTCGGAC 4599
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| ||||| || || || || || || || ||||| ||||| ||||| || ||||||||
Sbjct 4600 TCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAGCAG 4659
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||| || || || | || || ||| || ||| ||
Sbjct 4660 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 4719
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || ||||| || || ||
Sbjct 4720 CAGAAGGAGTCTACACTTCACCTGGT 4745
>seq1134
Length=11309
Score = 118 bits (130), Expect = 3e-21
Identities = 137/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || ||||| || || || || || || ||||| ||||| ||||| || |||
Sbjct 8483 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCGGAC 8542
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| ||| || || ||||| || || || |||||||| || ||||| || || ||||||||
Sbjct 8543 AGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATTCCGCCTGACCAGCAG 8602
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || |||||||| || || | || || | || || ||| ||
Sbjct 8603 CGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAACATC 8662
Query 178104 CAAAA 178108
|| ||
Sbjct 8663 CAGAA 8667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203693845963868
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |