Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1134 145 7e-30 seq542 141 9e-29 seq160 116 3e-21 seq1772 107 2e-18 >seq1134 Length=11309 Score = 145 bits (160), Expect = 7e-30 Identities = 149/192 (78%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| ||||| ||||| |||| |||||||||||||||||||| | Sbjct 8669 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 8610 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||| ||||| ||||| | |||| | |||||||||| |||||| ||||| || | Sbjct 8609 TCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCTGCTT-GACATTG 8551 Query 41793 ACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 || | |||| || |||||| || | ||| || || || |||||||| ||||| || Sbjct 8550 TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 8491 Query 41852 AAAATCTGCATG 41863 || ||||||||| Sbjct 8490 AAGATCTGCATG 8479 >seq542 Length=20326 Score = 141 bits (156), Expect = 9e-29 Identities = 172/237 (73%), Gaps = 18/237 (8%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || || | |||||| || || || ||||||||| ||||| |||||| Sbjct 5219 CCGCCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 5160 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||||||||| ||||| ||||| ||||| | || Sbjct 5159 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 5100 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA------- 41808 | || |||||||| |||||| ||||| |||| ||||| |||| Sbjct 5099 ATGCCTTCCTTGTCTTGGATTTTCTGCTT---------CACATTGTCGATCGAGTCCGAA 5049 Query 41809 --CTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || | ||| || || || |||||||| ||||| ||||| ||||||||| Sbjct 5048 GGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCATG 4992 Score = 140 bits (154), Expect = 3e-28 Identities = 172/238 (72%), Gaps = 18/238 (8%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||||| || || || ||||||||| ||||| |||||| Sbjct 216 GCCACCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 275 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||||||||| ||||| ||||| ||||| | || Sbjct 276 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 335 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA------ 41808 | || |||||||| |||||| ||||| |||| ||||| |||| Sbjct 336 GATGCCTTCCTTGTCTTGGATTTTCTGCTT---------CACATTGTCGATCGAGTCCGA 386 Query 41809 ---CTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || | ||| || || || |||||||| ||||| ||||| ||||||||| Sbjct 387 AGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCATG 444 Score = 140 bits (154), Expect = 3e-28 Identities = 172/238 (72%), Gaps = 18/238 (8%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||||| || || || ||||||||| ||||| |||||| Sbjct 4992 GCCACCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 4933 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||||||||| ||||| ||||| ||||| | || Sbjct 4932 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 4873 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA------ 41808 | || |||||||| |||||| ||||| |||| ||||| |||| Sbjct 4872 GATGCCTTCCTTGTCTTGGATTTTCTGCTT---------CACATTGTCGATCGAGTCCGA 4822 Query 41809 ---CTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || | ||| || || || |||||||| ||||| ||||| ||||||||| Sbjct 4821 AGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCATG 4764 Score = 134 bits (148), Expect = 1e-26 Identities = 160/220 (73%), Gaps = 18/220 (8%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 |||||| || || || ||||||||| ||||| |||||| || ||||| |||| || Sbjct 6 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 65 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||||||||||||||| ||||| ||||| ||||| | || | || |||||||| Sbjct 66 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 125 Query 41773 GATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---------CTCCACCTCCACCGT 41823 |||||| ||||| |||| ||||| |||| |||||| || | ||| Sbjct 126 GATTTTCTGCTT---------CACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGT 176 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || |||||||| ||||| ||||| ||||||||| Sbjct 177 GATGGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCATG 216 Score = 134 bits (148), Expect = 1e-26 Identities = 172/240 (72%), Gaps = 18/240 (8%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||||| || || || ||||||||| ||||| |||||| Sbjct 444 GCCACCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 503 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||||||||| ||||| ||||| ||||| | || Sbjct 504 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 563 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA------ 41808 | || |||||||| |||||| ||||| |||| ||||| |||| Sbjct 564 GATGCCTTCCTTGTCTTGGATTTTCTGCTT---------CACATTGTCGATCGAGTCCGA 614 Query 41809 ---CTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||| || | ||| || || || |||||||| ||||| || || |||||||| || Sbjct 615 AGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGTGTCTTCACAAAGATCTGCATCTT 674 Score = 134 bits (148), Expect = 1e-26 Identities = 172/240 (72%), Gaps = 18/240 (8%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||||| || || || ||||||||| ||||| |||||| Sbjct 4764 GCCACCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 4705 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||||||||| ||||| ||||| ||||| | || Sbjct 4704 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 4645 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA------ 41808 | || |||||||| |||||| ||||| |||| ||||| |||| Sbjct 4644 GATGCCTTCCTTGTCTTGGATTTTCTGCTT---------CACATTGTCGATCGAGTCCGA 4594 Query 41809 ---CTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||| || | ||| || || || |||||||| ||||| || || |||||||| || Sbjct 4593 AGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGTGTCTTCACAAAGATCTGCATCTT 4534 >seq160 Length=67763 Score = 116 bits (128), Expect = 3e-21 Identities = 101/124 (81%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || ||||| | |||||| || ||||||||||||||||| ||||| ||||| Sbjct 8603 CCACCACCACGCAGACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCC 8662 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGC 41751 || || ||||| |||| || ||||||||||| ||||| ||||| ||||| ||||| || Sbjct 8663 GACAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGC 8722 Query 41752 GGGA 41755 |||| Sbjct 8723 GGGA 8726 >seq1772 Length=15272 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||||| || || || ||||||||| ||||| |||||| Sbjct 15134 CCGCCACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 15193 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||||||||| ||||| ||||| ||||| | || Sbjct 15194 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 15253 Query 41756 ACGCTCTCCTTGTC 41769 | || |||||||| Sbjct 15254 ATGCCTTCCTTGTC 15267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462290003746400