Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq460 149 1e-30 seq364 113 1e-19 seq13 102 2e-16 >seq460 Length=20282 Score = 149 bits (164), Expect = 1e-30 Identities = 423/635 (67%), Gaps = 29/635 (5%) Strand=Plus/Plus Query 319401 CTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATG 319460 || |||||||| ||| || || |||||||| |||||||||| || | ||||| || Sbjct 14912 CTCCACGAACTTGGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGGGTC---TCGTAGTG 14968 Query 319461 GATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGA 319520 || || || || || | ||| ||||| | ||||||||| ||||| || | || || Sbjct 14969 AATGATGTTCGTACAGACCGTGTCAAGGAAGCTGGAGTCGTGGGACACCATGATGCTCGT 15028 Query 319521 AACGTCCTTAAGGTTGATCAGGTA-TTCAATCAA-CCACCTCACGTTAGACACAGAAAGA 319578 |||| | ||||| ||||||| ||| || | |||| ||||| ||| | Sbjct 15029 CACGTTCGGCAGGTTCGTCAGGTAGTTC--TCGAGCCACGCAACGTTCTTGACATCCAAG 15086 Query 319579 TGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGA 319638 ||||| |||||||| ||||||||||| | | || ||| | ||||| ||||| || || Sbjct 15087 TGGTTCGTCGGCTCATCAAGAAGCAGAATGTCGGCCTTCTGAAGCATAGCACGGGCCAGC 15146 Query 319639 GCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTG---GGGCAGATTGGCGCTCA 319695 | |||||||| ||||| || || ||||| ||| | | |||| ||| |||| Sbjct 15147 TCCAGTTTCATCTTCCAACCACCCGAAAGGGTGCCCACAGCCTGGGC---TTGCATCTCA 15203 Query 319696 -ATATCAAAGCCA-ACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTTT 319753 | || ||| ||| | || || |||| || | |||| | || | Sbjct 15204 GCGGTGAAGTCCACGCCGGT--AAGCGTGTCAACGACCTCCTGGCGAG---GAGTG---T 15255 Query 319754 CCTTTACTTGTTCATC--ATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGGACCC 319811 |||| | | ||||| | || |||||||| | | || | | | || || | Sbjct 15256 CCTTCAGGTCCTCATCGAACAGG--ATGAAGTCCACAACAGACAGCTCGGCCTCCGAAGC 15313 Query 319812 GTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATC-CGCAGAGGGGAACCCTTCAA 319870 | | | ||| || ||| | |||| |||| | || ||| || ||||| || |||| Sbjct 15314 CTGCAAGTTGTGCTCGACGAACACAGTCTTCAGCTCGTCGCGC-GACGGGAAGCCGTCAA 15372 Query 319871 GCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACACA 319930 |||||||||| |||||||||||| || || || ||||| ||||| || || |||| Sbjct 15373 GCTGGCCGTTGGAAATAGCGCGCATAAGCGTAGACTTACCGCAACCGTTGGGACCGCACA 15432 Query 319931 GACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCAC 319990 ||||||| |||| || || |||||| | || | ||||||||| ||||| | |||| Sbjct 15433 GACCGTAACGGTGGCCACGCTTCAGGCGAAGACGGGCGTTGTTCAGCAGAATCATACCAC 15492 Query 319991 CATATGCCAGAGAAAATTCACAATCACACAGATCC 320025 | || || || || || ||||| | || || ||| Sbjct 15493 CGTAAGCGAGCGAGAACTCACAGTTGCAAAGGTCC 15527 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| ||||| || ||||||| ||||| || ||||| ||| ||| || Sbjct 14501 CTCCTTGTCCTCACCAGACTGGAAACGCCACTGGATGTAGGCGTTGGCAGTCTCGTCGAG 14560 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || || || ||||| |||||||| ||||| || |||||||| | |||||| || || Sbjct 14561 GTGCTCTTCAATGTGATGGAAAGCGTGCTGAGCGACGTAAGCGAAACGCATGGAAGGGTG 14620 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || |||||||||||| ||| | | ||||| |||| ||| || || || Sbjct 14621 CTTCCATACCGTACCGATGGTGGGTTCAACCTCACCCGTCAGCATCTTGATCAGCGTCGA 14680 Query 319170 TTTCCCCGCACCGTT 319184 || || |||||||| Sbjct 14681 CTTACCGGCACCGTT 14695 >seq364 Length=28166 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 1732 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 1673 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1672 CCCACGGTGGGC 1661 >seq13 Length=222908 Score = 102 bits (112), Expect = 2e-16 Identities = 550/869 (63%), Gaps = 34/869 (4%) Strand=Plus/Plus Query 229758 GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTG 229817 |||||| ||||| | | ||| ||||| | |||||||||||||||| ||| | ||||| Sbjct 45581 GTTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCCAGCTTCTG 45640 Query 229818 GACCACTGAGGAAGTTC----CTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAACTCA 229873 ||| || ||||| | || | || | ||| || |||||| | || |||| Sbjct 45641 GAC---TGCGGAAGAGCTGGACTTGGTACAC-GACCTCAAGGACTGGGGA---AACCTCA 45693 Query 229874 ATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTA 229933 ||| |||| ||||| |||||||| ||| || | | || || || | | ||||| | Sbjct 45694 CAGACAACGAGCGTCACTTCATCAAGCACGTCTTGGCCTTCTTTGCCGCCAGTGATGGCA 45753 Query 229934 TTGTGATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGC 229993 | |||| || || || | |||||||| |||||| || || ||||| || Sbjct 45754 TCGTGAACGAGAACTTGGCCATGAACTTTAGCAATGAAGTACAAGTGCCTGAGGCTCGTT 45813 Query 229994 AATTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTG 230049 || || | | ||| | |||| | ||| ||||| || || || | ||| Sbjct 45814 GCTTCTACGGCTTCCAGATTGCCATTGA--GAAC--ATCCACTCAGAGGTGTACTCGCTG 45869 Query 230050 CTTATCGACGCGCTTATTTCCGACGAGCAAGAACGGAACGAGCTTTTTGATGCCATTGAA 230109 || || ||| || || |||| ||| | || | || | ||| ||||| Sbjct 45870 CTCATTGACACGTACATCAAGGACGCTGTGGAAAAGGACCACCTGCTGCGTGCAATTGAG 45929 Query 230110 AACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAAA 230169 | ||||||| || || ||||| | ||||| | || |||| || || | || Sbjct 45930 ACCATCCCGTGTGTGACCAAGAAGGCGAGTTGGGCGCTGAGATGGTGCGACCC--GAAAG 45987 Query 230170 T-----CGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCG 230224 | | | | |||||||| | || | | ||| || || || | || || | Sbjct 45988 TGTCCTCATACCCGGAGCGTCTTCTGGCATTCGCAGCTGTGGAGGGAATCTTCTTCTCGG 46047 Query 230225 GGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGT 230284 | || ||| ||||||| ||||| ||| ||| | |||||||| || | | | Sbjct 46048 GCTCCTTTTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCT 46107 Query 230285 CTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATT 230344 | |||||| |||||||||| || || ||| | || | | || | || |||| | Sbjct 46108 CCAACGAGCTCATCAGTCGTGATGAAGGTATGCACACAGACTTTGCTTGTCTGTTGTACT 46167 Query 230345 CAAAGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTG 230404 | ||||| || |||||| || || || | | || || || || || Sbjct 46168 CGAAGCTGGTGACCAAGCTGCCGGAGCAGCGTGTGCACGAGATTATCCGTGACGCTGTGA 46227 Query 230405 AAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCT 230463 | | |||| | |||||| | | ||| | | ||| || | || || ||||||||| | Sbjct 46228 AGATCGAACACGAGTTCGTGAGCGACTCGCTCCCA-GTGGAGCTGATCGGCATGAACTCG 46286 Query 230464 GAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGT--- 230520 | || ||| | |||||||| || ||||| || |||||| | | | | |||||| Sbjct 46287 GCGCTCATGTGCCAGTACATTGAGTTCGTGGCAGACCGCCTGCTGTATTCGCTTGGTGTG 46346 Query 230521 TACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAA 230580 | | ||| | |||||| |||||||| |||| | ||||| | || || || || Sbjct 46347 TCCAAGA---TCTACAACGTCAAGAACCCGTTTGACTGGATGGACATGATCTCTCTACAG 46403 Query 230581 GGGAAGACCAACTTCTTCGAAAAGCGTGT 230609 || ||||||||||||||||| |||||||| Sbjct 46404 GGCAAGACCAACTTCTTCGAGAAGCGTGT 46432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057798113063300