Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq13 102 8e-17 >seq13 Length=222908 Score = 102 bits (112), Expect = 8e-17 Identities = 208/307 (68%), Gaps = 4/307 (1%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || ||||| || ||||| || ||||| || ||||| |||||||| ||||| ||||| Sbjct 45886 ATGTACGTGTCAATGAGCAGCGAGTACACCTCTGAGTGGATGTTCTCAATGGCAATCTGG 45827 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTA 17351 || ||||| ||||| || || || | | ||| ||||| | || |||| || | Sbjct 45826 AAGCCGTAGAAGCAACGAGCCTCAGGCACTTGTACTTCATTGCTAAA--GTTCATGGCCA 45769 Query 17352 GATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAAT 17411 || |||||||||||||| || || ||||| || || ||||| | ||||| ||||| | Sbjct 45768 AGTTCTCGTTCACGATGCCATCACTGGCGGCAAAGAAGGCCAAGACGTGCTTGATGAAGT 45709 Query 17412 ATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTT 17471 |||| ||| || | ||||||||| | || | | |||| |||| Sbjct 45708 GACGCTCGTTGTCTGTGAGGTTTCCCCAGTCCTTGAGGTCGTGTACCAAGTCCAGCTCTT 45649 Query 17472 CGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTA 17531 | | ||||| || || ||| | ||||| || ||||| | ||| | || | | || | Sbjct 45648 CCGCAGTCCAGAAGCTGGCCTCCGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGGA 45589 Query 17532 TGGGGAA 17538 ||||||| Sbjct 45588 TGGGGAA 45582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517533243598800