Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq80 107 2e-18 >seq80 Length=102449 Score = 107 bits (118), Expect = 2e-18 Identities = 179/254 (70%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| || || || || |||| ||| |||||||||||||| || | || || || || Sbjct 13598 ATGGCGCTGCCGCCGTGCCACATGTTTTGTCAGTTTTACGTGGCGGATGGCGAGTTGTCG 13539 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 ||||| | |||||| | |||| || |||||||| || || ||||||||||| || | Sbjct 13538 TGCCAGATGTACCAGCGTTCGGCTGACATGGGCCTCGGCGTGCCGTTCAACATCGCCAGT 13479 Query 19092 TATGCACTTCTTAC-CTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAAT 19150 ||||| || || || | || | || || || || | || | ||| | || || || || Sbjct 13478 TATGCGCTACTGACGCGAC-TTGTGGCCCAAGTGGCTGGTTTGAAACCTGGCGAATTTAT 13420 Query 19151 TCATACAATGGGGGATGCACATATTTACTTGAATCA--TATAGATGCTTTAAAAGTGCAG 19208 || | || || |||||||| | ||| |||| || || || |||| | || |||| Sbjct 13419 CCACATTATTGGCGATGCACACGTATACCTGAACCACGTAGAGCCGCTTCAGAA--GCAG 13362 Query 19209 CTAGCTCGATCCCC 19222 ||||| || |||| Sbjct 13361 CTAGCACGCACCCC 13348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399494700295950