Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq80 93.3 3e-14 >seq80 Length=102449 Score = 93.3 bits (102), Expect = 3e-14 Identities = 365/569 (64%), Gaps = 4/569 (1%) Strand=Plus/Plus Query 101707 GTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAAT 101766 ||| ||||| || ||| | |||||||| || ||||| | | || || || || | Sbjct 13398 GTGTGCATCGCCAATAATGTGGATAAATTCGCCAGGTTTCAAACCAGCCACTTGGGCCAC 13457 Query 101767 CATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGC 101826 | | || | || | ||| || || ||||| || ||||| || | ||||| ||||| Sbjct 13458 AAGTCGCGTCAGTAGCGCATAACTGGCGATGTTGAACGGCACGCCGAGGCCCATGTCAGC 13517 Query 101827 TGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATAC 101886 || | || |||| || || || | || ||||| || ||||| |||| || | Sbjct 13518 CGAACGCTGGTACATCTGGCACGACAACTCGCCATCCGCCACGTAAAACTGACAAAACAT 13577 Query 101887 ATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACAT 101946 || || ||||||| | |||| | | | || | |||||| ||| ||| | || Sbjct 13578 GTGGCACGGCGGCAGCGCCATCTCATTGAGATCCGCCGGATTCCACGCAGACAGCACAAT 13637 Query 101947 CCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCC 102006 || | || || | ||| || | | | |||| || | ||| || ||||| Sbjct 13638 CCGACGGTCGGTCGAGTTCGTGCGCAGTTTGTGGATCACCTCAGCAAGTTGATCCACTCC 13697 Query 102007 TTCTCCTTTATAATC-GCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAA 102065 | ||| | || || || || || | || | ||||| || || | |||||| | Sbjct 13698 CTGTCCAGTGTAGTCTGCATGCATATCCGTG-TACTTGGCTCCAAAGTGACGCCACTGGA 13756 Query 102066 ATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAA 102125 |||||||||| ||||| ||||||||| | || || | | ||| | | || ||| Sbjct 13757 ATCCATACACTGGTCCCAGATCTCCTACTTCCCTCGACTGCAGTCCACGACTGTCCAAAT 13816 Query 102126 ATGATCTAGATCCATTCGCATCCCAAATGTGCACG-CCAGCTGCTGATAGCTCTTTGCTG 102184 | || |||||||| ||||||| || || | | || |||||| | | | || Sbjct 13817 ACTCTCGCGATCCATTGCCATCCCAGATATGAATGTCCTTCTGCTGCAACGTATGGGCAC 13876 Query 102185 TCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTC 102244 || ||| || || || ||||||| || ||| || | ||||||||||| || ||| || Sbjct 13877 TC-GTATCCCCACTAATGAACCACAGCAATTCCTCCGCCACACCTCTCCAGAACACTTTC 13935 Query 102245 TTAGTAGTTAAAAGTGGAAATTCATTTTC 102273 ||||| || | | ||| || |||| || Sbjct 13936 TTAGTCGTCAGCAATGGGAACACATTATC 13964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361242790749410