Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq80 149 4e-31 >seq80 Length=102449 Score = 149 bits (164), Expect = 4e-31 Identities = 413/619 (67%), Gaps = 16/619 (3%) Strand=Plus/Plus Query 97006 GTTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGA-GAGCATCAATGTGATTCAC 97064 || ||||| || | || || || | ||||||| | ||| | | || | ||| |||| Sbjct 13333 GTGGGGAATGGTCGCGGGGTGCGTGCTAGCTGCT-TCTGAAGCGGCTCTACGTGGTTCAG 13391 Query 97065 ATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATG 97124 || | ||| ||||| || | | |||| |||||||| ||||| ||| ||| || || Sbjct 13392 GTATACGTGTGCATCGCCAATAATGTGGATAAATTCGCCAGGTTTCAAACCAGCCACTTG 13451 Query 97125 GGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCAT 97184 ||| | | | || | ||| | ||| || || ||||| || ||||| || || ||||| Sbjct 13452 GGCCACAAGTCGCGTCAGTAGCGCATAACTGGCGATGTTGAACGGCACGCCGAGGCCCAT 13511 Query 97185 ATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACT 97244 ||||| || | || || | ||| || || | || ||||| ||| |||||||||| Sbjct 13512 GTCAGCCGAACGCTGGTACATCTGGCACGACAACTCGCCATCCGCCACGTAAAACTGACA 13571 Query 97245 CAATACATGACAGGGGGGCAACGCCATTT--TTGGAACATCTAAGACATTCCAAGCACAC 97302 || | || || || |||| |||||| | ||| | ||| |||||| ||| || Sbjct 13572 AAACATGTGGCACGGCGGCAGCGCCATCTCATTG--AGATCCGCCGGATTCCACGCAGAC 13629 Query 97303 ATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGA 97362 | || || | | ||||| | ||| ||| | | | | || | || | |||| Sbjct 13630 AGCACAATCCGACGGTCGGTCGAGTTCGTGCGCAGTTTGTGGATCACCTCAGCAAGTTGA 13689 Query 97363 TCAACGCCTTCTCCACCATAAT-TG--TGCTTAAGACCTTGATATTCTGCTCCAAAATGC 97419 || || || | |||| || | || ||| || || || || | |||||||| || Sbjct 13690 TCCACTCCCTGTCCAGTGTAGTCTGCATGCATAT--CCGTG-TACTTGGCTCCAAAGTGA 13746 Query 97420 CTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAA-CCAAG 97478 | ||| ||||||||||| || ||||| || |||||| |||| || || | | ||| | Sbjct 13747 CGCCACTGGAATCCATACACTGGTCCCAGATCTCCTACTTCCCTCG-ACTGCAGTCCACG 13805 Query 97479 CTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACA-CCAGATGCTGCAA 97537 | || ||||| | |||||||| ||||||| || || | || |||||||| Sbjct 13806 ACTGTCCAAATACTCTCGCGATCCATTGCCATCCCAGATATGAATGTCCTTCTGCTGCAA 13865 Query 97538 GCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCC 97597 | | || || ||| || || || ||||||| |||||| ||| | |||||||||| Sbjct 13866 CGTATGGGCACTC-GTATCCCCACTAATGAACCACAGCAATTCCTCCGCCACACCTCTCC 13924 Query 97598 AAAATACTCTCTTAGTTGT 97616 | || ||| ||||||| || Sbjct 13925 AGAACACTTTCTTAGTCGT 13943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346775927518700