Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq80 104 2e-17 >seq80 Length=102449 Score = 104 bits (114), Expect = 2e-17 Identities = 267/407 (66%), Gaps = 0/407 (0%) Strand=Plus/Minus Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277 || ||| |||| || ||||||||||| || ||| | || |||||||| | || || Sbjct 13781 GGAGATCTGGGACCAGTGTATGGATTCCAGTGGCGTCACTTTGGAGCCAAGTACACGGAT 13722 Query 20278 ATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATT 20337 ||| | || | || |||||| ||||| |||||| | | || || | | | Sbjct 13721 ATGCATGCAGACTACACTGGACAGGGAGTGGATCAACTTGCTGAGGTGATCCACAAACTG 13662 Query 20338 AAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCT 20397 |||||| | | |||| | | ||| | | | || ||||| | ||| | | Sbjct 13661 CGCACGAACTCGACCGACCGTCGGATTGTGCTGTCTGCGTGGAATCCGGCGGATCTCAAT 13602 Query 20398 TTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTG 20457 ||||| |||| || || || ||| | || || |||||||| || || || ||| Sbjct 13601 GAGATGGCGCTGCCGCCGTGCCACATGTTTTGTCAGTTTTACGTGGCGGATGGCGAGTTG 13542 Query 20458 TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCA 20517 ||||| || ||||| || || || ||||| ||||| || || || || ||||| || || Sbjct 13541 TCGTGCCAGATGTACCAGCGTTCGGCTGACATGGGCCTCGGCGTGCCGTTCAACATCGCC 13482 Query 20518 AGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTA 20577 ||||||||||| || ||| | | || || || | | ||| ||| | || || || Sbjct 13481 AGTTATGCGCTACTGACGCGACTTGTGGCCCAAGTGGCTGGTTTGAAACCTGGCGAATTT 13422 Query 20578 GTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACC 20624 |||||| || || || || || | ||||| || || |||| || Sbjct 13421 ATCCACATTATTGGCGATGCACACGTATACCTGAACCACGTAGAGCC 13375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399174707744950