Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq250 134 3e-26 seq16 123 5e-23 seq13 89.7 1e-12 >seq250 Length=44145 Score = 134 bits (148), Expect = 3e-26 Identities = 415/636 (65%), Gaps = 17/636 (3%) Strand=Plus/Minus Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 ||| || || ||||||| |||| || || || ||||||| |||||| || | Sbjct 42252 AGACTTTGAATACGATTATTTTGGCTTTAAGACACTGGAGAGGGGCTATCTCTTCCGTGT 42193 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 | ||||| | |||||||| ||||| ||| | ||||| |||||| | || || || Sbjct 42192 CCACGGCAAAGTGGTGGAACGTCCCCAGCAGATGATCATGCGCGTGGCTCTAGGCATCCA 42133 Query 248928 CAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGAC 248987 |||| |||| || | || ||||| ||| ||| || | | || Sbjct 42132 CAAGACGAACATCAAGGCGGCACTTGAGACTTACGAACTCATGTCGCAAAAATTCTTCAC 42073 Query 248988 ACATGCCACACCGACGCTCTTCAACGCCGGTAC----CGTCAACAATCAGCTGAGCTCGT 249043 || ||||| || ||||| ||||| || ||||| |||| ||||| || |||| Sbjct 42072 CCACGCCACCCCCACGCTGTTCAATGCTGGTACTCCACGTCCACAATTGTCT----TCGT 42017 Query 249044 GCTTTCTTCTTG-CCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAG 249102 |||| ||| ||| ||||||| || |||||| | || |||||||||||||| || |||||| Sbjct 42016 GCTT-CTTGTTGGCCATGCAGGATGACTCTATTGAAGGCATTTATGACACTCTGAAACAG 41958 Query 249103 ACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCG 249162 ||| || || || | ||||| || || || || | |||||||||||| Sbjct 41957 TGTGCGTGCATCTCCAAGTGGGCGGGAGGCATTGGCATCAGTATGCACAACATCCGAGCT 41898 Query 249163 AAGGGTTCGTACATCAAAGGTACAAATGG--GGTCAGTGATGGTATCGTACCCCTCCTTC 249220 | |||||| || || || || ||| | || ||| | ||| | || | Sbjct 41897 ACTAACAGCTACATCCGCGGCACGAACGGCTCGTC--CAACGGCATCATCCCCATGCTGC 41840 Query 249221 GATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCG---CCGAAAGGGGTCGT 249277 || ||| | || || | | | | |||||| || | || ||||| || | Sbjct 41839 GAGTGTTTAACGATACGGCACGATACGTGGACCAGGGTGGAGGTAAACGCAAGGGATCAT 41780 Query 249278 TCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGA 249337 | || || ||| ||||| ||||||||| ||| | || |||||| |||| ||| |||| Sbjct 41779 TTGCGATTTATCTGGAACCGTGGCACGCTGATGTGTTTGAGTTCTTGGATTTGCGCAAGA 41720 Query 249338 ACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACT 249397 || | || |||||||| | || |||||| | ||||| | |||||||| | || Sbjct 41719 ACCATGGTAACGAGCTGCACCGTGCACGTGACTTGTTCTATGCTCTGTGGGTGCCGGATC 41660 Query 249398 TGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGA 249433 |||||||| || || ||||| | ||| | |||| Sbjct 41659 TGTTCATGAAGCGTGTGGAGGCCAATGGCAAGTGGA 41624 >seq16 Length=195487 Score = 123 bits (136), Expect = 5e-23 Identities = 264/386 (68%), Gaps = 14/386 (4%) Strand=Plus/Minus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || || || ||||| ||| |||| ||||| || |||||||||||||| || || |||| Sbjct 195003 CTACCCCACTTGCTGTTCTACGGCCCTCCAGGCACAGGCAAGACGTCTACTATTGTGGCT 194944 Query 254061 CTGGCCCG--AACCCTGTTGGGC--GAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAA 254116 | | | ||| || |||||| || || || | ||| | || ||||| || Sbjct 194943 GTAGGGAGGCAACTCT-TTGGGCCGGACTTCCGCAAGAACGGCCGCTTCCTGGAGCTCAA 194885 Query 254117 CGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGAT 254176 ||| || ||||| || || | | || || || || ||| |||||| ||| || || Sbjct 194884 CGCGTCGGACGATCGTGGTATTAAGGTGGTGCGTGAGAAGGTCAAGAGCTTCGCCCAGGG 194825 Query 254177 GTCGATTT-CGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGG 254235 | ||| | || | | | ||| || || |||||| || | | |||||||||| Sbjct 194824 CGCCATTAGCAGCGCT---AGTGGACTG-CCACCCTTCAAGATCATCGTACTGGACGAGG 194769 Query 254236 CGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCG 254295 | ||| ||||||||| ||||| ||||| || || || || | |||||||| ||||| Sbjct 194768 CAGACTCCATGACGGGAGACGCACAGTCAGCACTGCGTCGTATGATGGAGAACTACTCCA 194709 Query 254296 TTGTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATCGCCCCGCTGGC 254353 || ||||| || || ||| | || |||||||| |||| ||||| | || |||| Sbjct 194708 AGGTCACGCGCTTCTGTCTGATCTGTAACTACGTAAGTCG--TATCATTGAGCCTGTGGC 194651 Query 254354 TTCTCGGTGCGCCAAGTTTCGATTCA 254379 || || || |||||||| || |||| Sbjct 194650 CTCCCGTTGTGCCAAGTTCCGCTTCA 194625 >seq13 Length=222908 Score = 89.7 bits (98), Expect = 1e-12 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| ||||||| |||| | ||||| || ||||||||||| ||||| ||| Sbjct 46456 ACGCCTGCCTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGTAGA 46397 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGC 157363 || |||||||||||||| || || ||||| | |||||| | |||| || ||| Sbjct 46396 GAGATCATGTCCATCCAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGC 46337 Query 157364 TGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTACT 157400 | |||| | ||| ||||| |||| ||||||| Sbjct 46336 GAATACAGCAGGCGGTCTGCCACGAACTCAATGTACT 46300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073740122922880