Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq80 167 5e-36 >seq80 Length=102449 Score = 167 bits (184), Expect = 5e-36 Identities = 459/696 (66%), Gaps = 12/696 (2%) Strand=Plus/Minus Query 35159 ACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGAC 35218 || |||||||| ||| | || | ||||| | || ||| | ||| ||| | || | Sbjct 14018 ACAGGAACAGGGACTTTGTCGGTGTTTGGGGCTCAGATGCGCTTCAGTCTGAGGGATAAT 13959 Query 35219 ACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCG 35278 | ||| | || || || |||||| | ||||||||||| || | ||| ||| | | Sbjct 13958 GTGTTCCCATTGCTGACGACTAAGAAAGTGTTCTGGAGAGGTGTGGCGGAGGAATTGCTG 13899 Query 35279 TGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGATACACATCTGG 35338 |||||||| || || |||| ||| | ||| ||||| | || || |||||| Sbjct 13898 TGGTTCATTAGTGGGGATACGAGTGCCCATACGTTGCAGCAGAAGGACATTCATATCTGG 13839 Query 35339 AACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGA 35398 | | ||||| ||||| || | |||||||||| | || | | || | || ||| Sbjct 13838 GATGGCAATGGATCGCGAGAGTATTTGGACAGTCGTGGACTGCAGTCGAGGGAAGTAGGA 13779 Query 35399 GATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATAT---GATACC 35455 ||| ||||||| || || |||||||| |||||||| ||||| || | || |||| Sbjct 13778 GATCTGGGACCAGTGTATGGATTCCAGTGGCGTCACTTTGGAGCCAAGTACACGGATA-- 13721 Query 35456 TGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTG 35515 || | | || || |||||| |||| | |||||| | || | | | | | ||| Sbjct 13720 TGCA-TGCAGACTACACTGGACAGGGAGTGGATCAACTTGCTGAGGTGATCCACAAACTG 13662 Query 35516 AG-AGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCA 35574 | | || || | || | |||| | || | || |||||||| |||||| | Sbjct 13661 CGCACGAACTCGACC-GACCGTCGGATTGTGCTGTCTGCGTGGAATCCGGCGGATCTCAA 13603 Query 35575 CCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATT 35634 ||||| || || || ||||||||| | ||| ||||| ||||| |||| || || Sbjct 13602 TGAGATGGCGCTGCCGCCGTGCCACATGTTTTGTCAGTTTTACGTGGCGGATGGCGAGTT 13543 Query 35635 GTCGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATT 35692 |||||||||| |||| ||||| || || ||| || | |||||||| ||||| || Sbjct 13542 GTCGTGCCAGATGTACCAGCGTTCGGCTGACATG--GGCCTCGGCGTGCCGTTCAACATC 13485 Query 35693 GCATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAG 35752 || || | || ||||| | || ||||| ||| ||| | ||||| || || Sbjct 13484 GCCAGTTATGCGCTACTGACGCGACTTGTGGCCCAAGTGGCTGGTTTGAAACCTGGCGAA 13425 Query 35753 TTTATCCTCACTCTTGGTGACGCACACATTTATAATACCCACATTGAGGTGTTAAAGAAG 35812 ||||||| || | |||| || |||||| | || | |||| | ||| | | ||||| Sbjct 13424 TTTATCCACATTATTGGCGATGCACACGTATACCTGAACCACGTAGAGCCGCTTCAGAAG 13365 Query 35813 CAGTTGTGCCGCGTCCCTAGACCATTCCCTAAGTTG 35848 ||| | ||| ||| |||||||||| | |||| Sbjct 13364 CAGCTAGCACGCACCCCGCGACCATTCCCCACGTTG 13329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989559783024050