Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq13 147 3e-30 seq250 109 7e-19 >seq13 Length=222908 Score = 147 bits (162), Expect = 3e-30 Identities = 386/585 (66%), Gaps = 7/585 (1%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| || ||| || || || ||||| ||| || || | ||| || | ||||| || | Sbjct 46164 ACAACAGACAAGCAAAGTCTGTGTGCATACCTTCATCACGACTGATGAGCTCGTTGGAGA 46105 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | | || || ||||| || |||||||| || ||||| || ||||| || || || | Sbjct 46104 AGCTCAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCG 46045 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCTG 33752 | ||||||||||| || || || || || || | ||| | ||| || || | || Sbjct 46044 AGAAGAAGATTCCCTCCACAGCTGCGAATGCCAGAAGACGCTCCGGGTATGAGGACACTT 45985 Query 33753 TCATGTATCCACTTTTGAGC--CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 || || | | | | ||| |||| |||||||| | ||||| || || || || | Sbjct 45984 TCGGGTCGCACCATCTCAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAA 45925 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 | ||| | || | || ||||| | || || | || || || || | || Sbjct 45924 TTGCACGCAGCAGGTGGTCCTTTTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCG 45865 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 |||| || || || ||||| |||||||| ||||| || |||||||| || | ||||| Sbjct 45864 AGTACACCTCTGAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAACGAGCCT 45805 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCATC 33988 | | | || ||||| | | ||| |||| || || || || ||||| || ||||| Sbjct 45804 CAGGCACTTGTACTTCATTGCTAAA--GTTCATGGCCAAGTTCTCGTTCACGATGCCATC 45747 Query 33989 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 34048 |||||| ||||| || ||||| || || || || || | |||| ||| || || Sbjct 45746 ACTGGCGGCAAAGAAGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGGTT 45687 Query 34049 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 34108 ||| || |||| || | | |||| |||||| | ||||| || ||||| Sbjct 45686 TCCCCAGTCCTTGAGGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGGCCTC 45627 Query 34109 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 34153 ||||| || ||||| | ||| | ||| || | ||||| ||||| Sbjct 45626 CGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGGATGGGGAA 45582 >seq250 Length=44145 Score = 109 bits (120), Expect = 7e-19 Identities = 436/682 (64%), Gaps = 6/682 (1%) Strand=Plus/Plus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 ||||| | ||| ||||| || | ||| ||| || ||||| || ||||| || | | Sbjct 41611 GGACAGAACAAACTCCACTTGCCATTGGCCTCCACACGCTTCATGAACAGATCCGGCACC 41670 Query 63294 CAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63352 || ||||| ||| || | || | || | || |||||| || ||||| | Sbjct 41671 CACAGAGC-ATAGAACAAGTCACGTGCACGGTGCAGCTCGTTACCATGGTTCTTGCGCAA 41729 Query 63353 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63412 ||| | |||| | | | ||||| ||||||||||||| || || || | ||| Sbjct 41730 ATCCAAGAACTCAAACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTT 41789 Query 63413 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63472 ||||| ||| ||||| || | ||||| || || | ||| | |||| || ||| || Sbjct 41790 GCGTTTACCTCCACCCTGGTCCACGTATCGTGCCGTATCGTTAAACACTCGCAGCATGGG 41849 Query 63473 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATAT- 63531 || || ||||| || || || || ||| ||| |||| | | || || || | Sbjct 41850 GATGATGCCGTTGGACGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTT 41909 Query 63532 -TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 63590 | | | |||| || || || || ||| || ||||| | || || |||| | Sbjct 41910 GTGCATACTGAT--GCCAATGCCTCCCGCCCACTTGGAGATGCACGCACACTGTTTCAGA 41967 Query 63591 GTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT 63650 |||||||| |||||||| || ||||| |||| | | || || ||||| | Sbjct 41968 GTGTCATAAATGCCTTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAAT 42027 Query 63651 TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63710 || |||| | ||| || ||||| || | || || | ||||| || || |||||| Sbjct 42028 TGTGGACGTGGAGTACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGC 42087 Query 63711 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63770 || | || | ||| ||||||| || | | || | | | || || |||| || Sbjct 42088 GACATGAGTTCGTAAGTCTCAAGTGCCGCCTTGATGTTCGTCTTGTGGATGCCTAGAGCC 42147 Query 63771 ACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAG 63830 || ||||| | ||| ||||| || | ||| || | |||| || | || | ||| Sbjct 42148 ACGCGCATGATCATCTGCTGGGGACGTTCCACCACTTTGCCGTGGACACGGAAGAGATAG 42207 Query 63831 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 63890 | |||| || ||||| |||||||| | |||| ||||||||| || | ||||| Sbjct 42208 CCCCTCTCCAGTGTCTTAAAGCCAAAATAATCGTATTCAAAGTCTCGGTCATGGATAATG 42267 Query 63891 ACCGAATTGAGCTTATCCTTAT 63912 |||| || || | || |||| Sbjct 42268 GCCGAGTTCAGTTGGTCTTTAT 42289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629802563104800