Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq80 165 7e-36 >seq80 Length=102449 Score = 165 bits (182), Expect = 7e-36 Identities = 304/446 (68%), Gaps = 0/446 (0%) Strand=Plus/Plus Query 20889 GGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAA 20948 || || || |||||||| | ||||| | | || || || |||||||| ||| Sbjct 13336 GGGAATGGTCGCGGGGTGCGTGCTAGCTGCTTCTGAAGCGGCTCTACGTGGTTCAGGTAT 13395 Query 20949 ACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCG 21008 ||||| || || || | |||| | ||| || || || ||| || | || || || Sbjct 13396 ACGTGTGCATCGCCAATAATGTGGATAAATTCGCCAGGTTTCAAACCAGCCACTTGGGCC 13455 Query 21009 ATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCG 21068 | || |||||| || || || ||||||||||| ||||| || |||||||||||||| Sbjct 13456 ACAAGTCGCGTCAGTAGCGCATAACTGGCGATGTTGAACGGCACGCCGAGGCCCATGTCA 13515 Query 21069 GCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAA 21128 || || | |||||||| |||||| |||| ||| || ||||||||||||||||| || Sbjct 13516 GCCGAACGCTGGTACATCTGGCACGACAACTCGCCATCCGCCACGTAAAACTGACAAAAC 13575 Query 21129 ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACG 21188 | ||| || || || || |||||| ||| ||||| || |||||||| ||| || Sbjct 13576 ATGTGGCACGGCGGCAGCGCCATCTCATTGAGATCCGCCGGATTCCACGCAGACAGCACA 13635 Query 21189 ATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCCACC 21248 || || || ||| | | || | | | | ||| | | || || ||||| Sbjct 13636 ATCCGACGGTCGGTCGAGTTCGTGCGCAGTTTGTGGATCACCTCAGCAAGTTGATCCACT 13695 Query 21249 CCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGG 21308 ||||| || ||||| || | || |||||| || ||||| || | ||||||| Sbjct 13696 CCCTGTCCAGTGTAGTCTGCATGCATATCCGTGTACTTGGCTCCAAAGTGACGCCACTGG 13755 Query 21309 AACCCGTACACCGGCCCCAGATCGCC 21334 || || ||||| || |||||||| || Sbjct 13756 AATCCATACACTGGTCCCAGATCTCC 13781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427766042176800