Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq13 212 9e-50 seq80 129 9e-25 seq250 120 5e-22 >seq13 Length=222908 Score = 212 bits (234), Expect = 9e-50 Identities = 596/890 (67%), Gaps = 40/890 (4%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| |||||| | | || ||| | ||| | |||||||| ||||| ||||| ||| Sbjct 45579 CTGTTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCCAGCTTC 45638 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | |||||| | || || | ||||| | || |||| | | | || Sbjct 45639 TGGACTGCGGAAGAGCTGGACTTGGTACACGACCTCAAGGACTGGGGAAACC---TCACA 45695 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || | ||||| | || || |||| | |||||||||||||||| | ||||| ||| Sbjct 45696 GACAACGAGCGTCACTTCATCAAGCACGTCTTGGCCTTCTTTGCCGCCAGTGATGGCATC 45755 Query 125175 GTCAACGACAATCTGTTGACACGAT-TCTCTCAA-GAGTTGACCATT-CCAGAGGTGTCG 125231 || ||||| || || | || || | | ||| || | || | | || |||| ||| Sbjct 45756 GTGAACGAGAACTTG--GCCATGAACTTTAGCAATGAAGT-ACAAGTGCCTGAGGC-TCG 45811 Query 125232 T-GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACT 125290 | |||| ||||| ||||| || ||||||||| | ||||| || ||||||| || Sbjct 45812 TTGCTTCTACGGCTTCCAGATTGCCATTGAGAACATCCACTCAGAGGTGTACTCGCTGCT 45871 Query 125291 GATTGACATGTACATTCGCGATCCGCAACGTAAA-----CACATGCTCTTTAACGCAATC 125345 ||||||| |||||| || ||| | ||| ||| |||| | ||||| Sbjct 45872 CATTGACACGTACATCAAGGA--CGCTGTGGAAAAGGACCACCTGCTGCGT---GCAATT 45926 Query 125346 GACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGAC 125405 || || | |||| | | || ||||| |||| | | | ||| ||| ||| Sbjct 45927 GAGACCATCCCGTGTGTGACCAAGAAGGCGAGTTGGGCGCTGAGATGGTGCGACC-CGAA 45985 Query 125406 AA-GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC 125464 | ||| || ||| | || | || |||||||||| || || ||||| |||||||| || Sbjct 45986 AGTGTCCTCATACCCGGAGCGTCTTCTGGCATTCGCAGCTGTGGAGGGAATCTTCTTCTC 46045 Query 125465 GGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGC 125523 ||| | |||||| ||||||| |||||||||||||| || |||||||| || |||| Sbjct 46046 GGGCTCCTTTTGCT-CCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCT 46104 Query 125524 ACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT 125583 | |||||| | || ||| || || || | ||| |||||||| ||| ||| Sbjct 46105 TCTCCAACGAGCTCATCAGTCGTGATGAAGGTATGCACACAGACTTTGCTTGTCTGTTGT 46164 Query 125584 TTCGCAACTATCTGCGTCCCGAG-TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTA 125642 | | | | ||| || || ||| | ||||| || | | ||| | Sbjct 46165 A-CTCGA--AGCTGGTGACCAAGCTGCCGGAGCAGCGT-------GTGCACGAGATTATC 46214 Query 125643 ACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCATGAT 125701 || || |||| ||| ||||| ||||| | | ||| || || || || ||| |||| Sbjct 46215 CGTGACGCTGTGAAGATCGAACACGAGTTCGTGAGCGACTCGCTCCCAGTGGAGC-TGAT 46273 Query 125702 TGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTA 125761 |||||||||| ||| |||||| ||||||| ||||| |||||||| || || ||||| Sbjct 46274 CGGCATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTCGTGGCAGACCGCCTGCTGTA 46333 Query 125762 CGAG-TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCA 125820 | ||| | | | |||||| ||||||| |||||| || ||||| | ||| || | Sbjct 46334 TTCGCTTGGTGTGTC-CAAGATCTACAACGTCAAGAACCCGTTTGACTGGATGGACATGA 46392 Query 125821 TATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || ||| |||| ||||||||||| ||||||||| || |||||||| Sbjct 46393 TCTCTCTACAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTAC 46442 >seq80 Length=102449 Score = 129 bits (142), Expect = 9e-25 Identities = 306/452 (68%), Gaps = 8/452 (2%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || |||||||| |||||||| |||||||||||| | |||| || ||||||| || Sbjct 13781 GGAGATCTGGGACCAGTGTATGGATTCCAGTGGCGTCACTTTGGAGCCAAGTACACGGAT 13722 Query 70127 -TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAA-TTGCAGACAATCATTGACACTC 70184 ||| | ||||||| | || ||||| || |||||| |||| || | || ||| | Sbjct 13721 ATGCATG-CAGACTACACTGGACAGGGAGTGGATCAACTTGCTGAGG-TGATCCACAAAC 13664 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | || || | || || | |||| || ||| | |||||||| || ||| | Sbjct 13663 TGCGCACGAACTCGACCGACCGTCGGATTGTGCTGTCTGCGTGGAATCCGGCGGATCTCA 13604 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACGATGGCAAA 70303 | | ||||| || || ||||| ||| ||||| | |||||||||| | |||||| | Sbjct 13603 ATGAGATGGCGCTGCCGCCGTGCCACATGTTTTG-TCAGTTTTACGTGGCGGATGGCGAG 13545 Query 70304 TTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATT 70363 ||||| ||| ||||| ||| | || |||||||||||||| || || || ||||| Sbjct 13544 TTGTCGTGCCAGATGTACCAGCGTTCGGCTGACATGGGCCTCGGCGTGCCGTTCAACATC 13485 Query 70364 GCAAGCTATTCTATGTTGACGC-ACATGATTGCTCACATTACCGGCCTGAAAGCGCACGA 70422 || || ||| | | |||||| || || | || || | | || ||||| | ||| Sbjct 13484 GCCAGTTATGCGCTACTGACGCGACTTG-TGGCCCAAGTGGCTGGTTTGAAACCTGGCGA 13426 Query 70423 GTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGT 70482 || | |||| |||||||| || ||||| || | || ||| | ||||| | || Sbjct 13425 ATTTATCCACATTATTGGCGATGCACACGTATACCTGAACCACGTAGAGCCGCTTCAGAA 13366 Query 70483 GCAACTCGAACGGGAGCCGAGACCTTTTCCCA 70514 ||| || | ||| ||| |||| || |||| Sbjct 13365 GCAGCTAGCACGCACCCCGCGACCATTCCCCA 13334 >seq250 Length=44145 Score = 120 bits (132), Expect = 5e-22 Identities = 315/474 (66%), Gaps = 14/474 (3%) Strand=Plus/Minus Query 96916 TGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTG 96975 ||||||| |||||||| || || ||||| || | || ||||||| ||| ||| | Sbjct 41767 TGGAACCGTGGCACGCTGATGTGTTTGAGTTCTTGGATTTGCGCAAGAACCATGG---TA 41711 Query 96976 AAGAG--GCAC-GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGA 97032 | ||| |||| | || | |||||||| ||||| || |||||||| ||| ||||||||| Sbjct 41710 ACGAGCTGCACCGTGCACGTGACTTGTTCTATGCTCTGTGGGTGCCGGATCTGTTCATGA 41651 Query 97033 AGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGT 97092 |||| || | | | |||| | ||||| | | || ||| || | | |||||||| | Sbjct 41650 AGCGTGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAGGCTCCCGGTCTAT 41591 Query 97093 CCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-A 97151 ||| |||||||| || ||||| ||| | || | ||||||| || ||||| Sbjct 41590 ACGAGTGCTGGGGAGAGGAGTTCGAGACGCTGTTTGAGAAGTACGAGCGTGAAGGCCGCG 41531 Query 97152 TACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAG 97211 || |||| | || |||| | | | |||||| || || || || ||| | ||| Sbjct 41530 CCCGCAAGAC-AATCAATGCTCAACAGCTGTGGTTCGCTATTCTGGACGCGCAGATTGAG 41472 Query 97212 ACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCAC 97271 || || || | ||| || |||||||| ||| || ||||| |||||| | || Sbjct 41471 ACGGGCGTGCCTTTCATGCTGTACAAGGACGCCGCCAACCGCAAGTCCAACCAGCAGAAC 41412 Query 97272 TTGGGCACCATCAAGGGCTC---CAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCG 97328 | ||||| || |||| ||| ||||| ||| | | |||||| | || || Sbjct 41411 CTCGGCACGAT---TCGCTCGAGCAACTTGTGCTGTGAAGTGATGGAGTACACGTCGCCC 41355 Query 97329 GACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGAG 97382 || || ||| || ||| |||| || || || |||||||| || ||| Sbjct 41354 GATGAAGTGGCCGTGTGCAACTTGGCGTCCGTGGCGCTCCCCAAGTTCGTTGAG 41301 Score = 93.3 bits (102), Expect = 6e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 |||||||| || |||||||| | ||| || | | || || |||| || | ||| Sbjct 40631 TACAAGACGGTGTGGGAGATCAAGCAGAAGTCGATTCTGGACCTGTCTGCGGATCGTGGT 40572 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | |||||| |||||||| ||| | || | || | ||||| || || | || Sbjct 40571 GCCTACATCTGTCAGAGTCAGTCGCTGAACATTCACATCGCCGAACCGACAAAAAGCAAG 40512 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 | || ||||| ||||||||||| ||||| ||||| |||||||||||||||||||| Sbjct 40511 CTTACATCGATGCACTTTTACGCGTGGAAGAAGGGGCTCAAGACGGGCATGTACTA 40456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741041507211600