Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq80 129 4e-25 >seq80 Length=102449 Score = 129 bits (142), Expect = 4e-25 Identities = 333/496 (67%), Gaps = 21/496 (4%) Strand=Plus/Plus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| ||| ||||| |||||||| | |||||| ||||| || || || | | ||||| Sbjct 13360 AGCTGCTTCTGAAGCGGCTCTACGTGGTTCAGGTATACGTGTGCATCGCCAATAATGTGG 13419 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTA-CGTGAGGAGAAAGTA 25531 | ||| || || |||| | || | || | |||| || || ||| || || || Sbjct 13420 ATAAATTCGCCAGGTTTCAAACCAGCCACTTGGGCCA-CAAGTCGCGTCAGTAGCGCATA 13478 Query 25532 GCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGAC 25591 ||||||||||| || || || |||| |||||||| || || | |||||| | ||| | Sbjct 13479 ACTGGCGATGTTGAACGGCACGCCGAGGCCCATGTCAGCC-GAACGCTGGTACATCTGGC 13537 Query 25592 ACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTA 25651 |||| | ||| | || ||||||||||||||| | ||| |||||| || || || | Sbjct 13538 ACGACAACTCGCCATCCGCCACGTAAAACTGACAAAACATGTGGCACGGCGGCAGCGCCA 13597 Query 25652 TAAGGCCCA---AG-TCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTC-TTCTGG 25706 | | || || || || ||||| || ||| | || | | ||| || | Sbjct 13598 T----CTCATTGAGATCCGCCGGATTCCACGCAGACAGCACAATCCGACGGTCGGTCGAG 13653 Query 25707 GTTGT-CCCTGAT--AAGATCCGCGGTGTTTTGC-AGCTGATCCACCCCCATCCCCGAGT 25762 | || | | | | |||| | | || || |||||||| ||| || | || Sbjct 13654 TTCGTGCGCAGTTTGTGGATCACC-----TCAGCAAGTTGATCCACTCCCTGTCCAGTGT 13708 Query 25763 AGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCG 25822 ||||||| ||| |||||||||| ||||| || | | ||||||||| || ||||| | Sbjct 13709 AGTCTGCATGCATATCCGTGTACTTGGCTCCAAAGTGACGCCACTGGAATCCATACACTG 13768 Query 25823 GTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAAC 25882 |||| || ||||| ||||||| || | || | | |||||| | |||| || | Sbjct 13769 GTCCCAGATCTCCTACTTCCCTCGACTGCAGTCCACGACTGTCCAAATACTCTCGCGATC 13828 Query 25883 CATTGGCGTCCCAGAT 25898 ||||| | |||||||| Sbjct 13829 CATTGCCATCCCAGAT 13844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340129682234430