Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq43 136 6e-28 >seq43 Length=134600 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || |||||||| || ||||||||||| || || Sbjct 29612 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCTGCCAT 29671 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| |||||||| || || ||||| ||||||| || |||| || |||| Sbjct 29672 CCGTCGTCTGGCACGTCGTGGCGGTGTGAAGCGCATCTCTGGCCTGATCTACGAGGAGAC 29731 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| | ||||| ||| ||| |||| || | | || || || Sbjct 29732 GCGTGGCGTGCTCAAGGTGTTCCTTGAGAACGTGATCCGCGACTCGGTGACGTACACGGA 29791 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || || || || | ||||| | || || || |||| ||||| || Sbjct 29792 GCACGCTCGCCGCAAAACGGTGACTGCGATGGACGTGGTGTACGCTCTGAAGCGTCAGGG 29851 Query 16672 CCG 16674 ||| Sbjct 29852 CCG 29854 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || |||||||| || ||||||||||| || || Sbjct 32582 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCTGCCAT 32523 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| |||||||| || || ||||| ||||||| || |||| || |||| Sbjct 32522 CCGTCGTCTGGCACGTCGTGGCGGTGTGAAGCGCATCTCTGGCCTGATCTACGAGGAGAC 32463 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| | ||||| ||| ||| |||| || | | || || || Sbjct 32462 GCGTGGCGTGCTCAAGGTGTTCCTTGAGAACGTGATCCGCGACTCGGTGACGTACACGGA 32403 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || || || || | ||||| | || || || |||| ||||| || Sbjct 32402 GCACGCTCGCCGCAAAACGGTGACTGCGATGGACGTGGTGTACGCTCTGAAGCGTCAGGG 32343 Query 16672 CCG 16674 ||| Sbjct 32342 CCG 32340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073453673630