Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq13 150 2e-31 seq250 104 3e-17 >seq13 Length=222908 Score = 150 bits (166), Expect = 2e-31 Identities = 387/585 (66%), Gaps = 7/585 (1%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| || ||| || || || ||||| ||| || || | ||| || || |||||||| | Sbjct 46164 ACAACAGACAAGCAAAGTCTGTGTGCATACCTTCATCACGACTGATGAGCTCGTTGGAGA 46105 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | | || || ||||| || |||||||| || ||||| || ||||| || || || | Sbjct 46104 AGCTCAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCG 46045 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCTG 33474 | ||||||||||| || || || || || || | ||| | ||| || || | || Sbjct 46044 AGAAGAAGATTCCCTCCACAGCTGCGAATGCCAGAAGACGCTCCGGGTATGAGGACACTT 45985 Query 33475 TCATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 || || ||| | | |||||| |||||||| | ||||| || || || || | Sbjct 45984 TCGGGTCGCACCATCTCAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAA 45925 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592 | ||| | || | || ||||| | || || | || || || || | || Sbjct 45924 TTGCACGCAGCAGGTGGTCCTTTTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCG 45865 Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652 |||| || || || ||||| |||||||| ||||| || |||||||| || | ||||| Sbjct 45864 AGTACACCTCTGAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAACGAGCCT 45805 Query 33653 CGGTAATCTGTACTTCTGTACAAAATCGTTC--CGCCAAATTTTCATTCACTATTCCGTC 33710 | | | |||||||| | | ||| |||| ||||| || || ||||| || || || Sbjct 45804 CAGGCACTTGTACTTCATTGCTAAA--GTTCATGGCCAAGTTCTCGTTCACGATGCCATC 45747 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 33770 |||||| ||||| || ||||| || || || || || | |||| ||| || || Sbjct 45746 ACTGGCGGCAAAGAAGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGGTT 45687 Query 33771 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 33830 ||| || |||| || | | || | |||||| | ||||| || ||||| Sbjct 45686 TCCCCAGTCCTTGAGGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGGCCTC 45627 Query 33831 TGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAA 33875 ||||| || ||||| | ||| | ||| | | ||||| ||||| Sbjct 45626 CGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGGATGGGGAA 45582 >seq250 Length=44145 Score = 104 bits (114), Expect = 3e-17 Identities = 462/727 (64%), Gaps = 6/727 (1%) Strand=Plus/Plus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 |||||||| |||||||| | || | || ||| || | ||||| | ||| | Sbjct 41566 TCGAACTCCTCTCCCCAGCACTCGTATAGACCGGGAGCCTCGTTGGGACAGAACAAACTC 41625 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63256 |||| || | ||| ||| || ||||| || ||||| || | ||| ||||| ||| || Sbjct 41626 CACTTGCCATTGGCCTCCACACGCTTCATGAACAGATCCGGCACCCACAGAGC-ATAGAA 41684 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 | || | | | || |||||| || ||||| | ||| | |||| | | Sbjct 41685 CAAGTCACGTGCACGGTGCAGCTCGTTACCATGGTTCTTGCGCAAATCCAAGAACTCAAA 41744 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376 | ||||| ||||||||||||| || || || | ||| ||||| ||| || Sbjct 41745 CACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACC 41804 Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 ||| || | ||||| || || | ||| | |||| || ||| || || || ||||| || Sbjct 41805 CTGGTCCACGTATCGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGA 41864 Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAGA 63494 || || || ||| ||| ||||| | | || || || | | | | |||| Sbjct 41865 CGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGAT--G 41922 Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554 || || || || ||| || ||||| | || || |||| | |||||||| || || Sbjct 41923 CCAATGCCTCCCGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCT 41982 Query 63555 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63614 || || ||||| |||| | | || || ||||| ||| |||| ||| Sbjct 41983 TCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGAGTA 42042 Query 63615 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63674 || ||||| || | || || | ||||| || || |||||| || | || | ||| Sbjct 42043 CCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAA 42102 Query 63675 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63734 ||||||| || | | || | | | || || |||| || || ||||| | ||| Sbjct 42103 GTCTCAAGTGCCGCCTTGATGTTCGTCTTGTGGATGCCTAGAGCCACGCGCATGATCATC 42162 Query 63735 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63794 ||||| || | ||| || | ||| || | || | ||| | |||| || Sbjct 42163 TGCTGGGGACGTTCCACCACTTTGCCGTGGACACGGAAGAGATAGCCCCTCTCCAGTGTC 42222 Query 63795 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTA 63854 ||||| |||||||| | |||| ||||||||| || | ||||| ||||||| |||| Sbjct 42223 TTAAAGCCAAAATAATCGTATTCAAAGTCTCGGTCATGGATAATGGCCGAGTTCAGTTGG 42282 Query 63855 TCCTTAT 63861 || |||| Sbjct 42283 TCTTTAT 42289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622932327135600