Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq250 309 8e-79 seq13 84.2 6e-11 >seq250 Length=44145 Score = 309 bits (342), Expect = 8e-79 Identities = 871/1333 (65%), Gaps = 7/1333 (1%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||||| || || ||| ||||||||| |||| |||||| ||||||| Sbjct 42077 TTCACCCACGCCACCCCCACGCTGTTCAATGCTGGTACTCCACGTCCACAATTGTCTTCG 42018 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | | ||| |||| || || || || || || | |||||| || || | Sbjct 42017 TGCTTCTTGTTGGCCATGCAGGATGACTCTATTGAAGGCATTTATGACACTCTGAAACAG 41958 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 ||||| || |||||| || || || ||||| | || ||||| | || || Sbjct 41957 TGTGCGTGCATCTCCAAGTGGGCGGGAGGCATTGGCATCAGTATGCACAACATCCGAGCT 41898 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||||| ||||| |||||||| || | || || || | | |||||||| || Sbjct 41897 ACTAACAGCTACATCCGCGGCACGAACGGCTCGTCCAACGGCATCATCCCCATGCTGCGA 41838 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 |||||| || |||| || | ||||| |||||||||||||| || ||||| || | ||| Sbjct 41837 GTGTTTAACGATACGGCACGATACGTGGACCAGGGTGGAGGTAAACGCAAGGGATCATTT 41778 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || ||||| || || || || ||| | |||||||| | || | || || ||| Sbjct 41777 GCGATTTATCTGGAACCGTGGCACGCTGATGTGTTTGAGTTCTTGGATTTGCGCAAGAAC 41718 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| ||||||||||| |||||||||| || ||||| | || | Sbjct 41717 CATGGTAACGAGCTGCACCGTGCACGTGACTTGTTCTATGCTCTGTGGGTGCCGGATCTG 41658 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 || |||||||| |||||||| | || ||| | || || || |||| ||| Sbjct 41657 TTCATGAAGCGTGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAGGCTCCC 41598 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 ||||| | ||| ||||| || || | | | || | || ||||| || || Sbjct 41597 GGTCTATACGAGTGCTGGGGAGAGGAGTTCGAGACGCTGTTTGAGAAGTACGAGCGTGAA 41538 Query 364087 GGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAG 364146 || || || |||||||| || || |||| ||||| || || |||| ||||| Sbjct 41537 GGCCGCGCCCGCAAGACAATCAATGCTCAACAGCTGTGGTTCGCTATTCTGGACGCGCAG 41478 Query 364147 ATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAG 364206 |||||||| || || | ||| ||||||| || | ||||||||||||||||||| Sbjct 41477 ATTGAGACGGGCGTGCCTTTCATGCTGTACAAGGACGCCGCCAACCGCAAGTCCAACCAG 41418 Query 364207 CAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCT 364266 ||| |||| || || |||| ||||||| | || || | || || ||||| | Sbjct 41417 CAGAACCTCGGCACGATTCGCTCGAGCAACTTGTGCTGTGAAGTGATGGAGTACACGTCG 41358 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGAT 364326 ||||| || ||||| || ||| | ||||| | ||||| || ||| || | | Sbjct 41357 CCCGATGAAGTGGCCGTGTGCAACTTGGCGTCCGTGGCGCTCCCCAAGTTCGTTGAGAAC 41298 Query 364327 GGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCT-ACTTGCAATCTCGA 364385 | || || || || | || ||||| || | | || | || |||| || | Sbjct 41297 GCCGTGTTCAACTACAAGAAGCTGTATGAGGTCGTC-AAGGTGATCACACGCAACCTGAA 41239 Query 364386 CAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCA 364445 |||||| |||||| || || || || || ||| || ||| || |||||||| Sbjct 41238 CAAGGTCATCGACGTCAACTACTACCCCGTTATTGAGGCTCGCAATTCCAACATGCGTCA 41179 Query 364446 TCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGC 364505 || || ||||| ||||||| |||||||| || |||| ||| || | | | | || Sbjct 41178 CCGTCCTGTTGGTATTGGTGTGCAGGGCCTTGCGGACGCTTTCATCCTCATGGACTTTGC 41119 Query 364506 ATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGC 364565 || || || || || |||| || || ||| | ||||| || || || || | || Sbjct 41118 GTTCGAGAGTCCGGAGGCGCGTGAGCTCAACAAGAATATCTTCGAGACCATCTACTACGC 41059 Query 364566 CGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGG 364625 | ||| | ||| || |||| | ||| |||| |||| |||| Sbjct 41058 TTCTATGGAGACGTCGATGGAACTGGCCACGGAATTGGGCCCGTACGAGACTTTCCAGGG 40999 Query 364626 GTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCG 364685 || ||| |||| | |||||||| ||| | ||| | |||||||| || |||| Sbjct 40998 TTCGCCTGCCAGCAAGGGTATCTTCCAGTTCGATATGTGGGACGTCACGCCTTC-CTCCG 40940 Query 364686 ----ATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCC 364741 ||| |||||| | |||| || || ||| | || ||||| || | Sbjct 40939 GTCTGTGGGACTGGGCTGCGCTTAAGGAGAAGGTGGTCAAGAACGGCCTGCGCAATTCGC 40880 Query 364742 TCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCT 364801 || | ||||| ||||| ||||| ||||| |||||||||||||| || ||||||| Sbjct 40879 TCCTGGTCGCGCCGATGCCGACGGCGTCTACGGCACAGATCCTCGGTAATAACGAGTCTA 40820 Query 364802 TCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAG 364861 |||||||||| || ||| | || ||||| || ||| | ||||| ||| | | | Sbjct 40819 TCGAACCGTTCACCTCCAACATGTACAACCGCCGCGTGCTTGCGGGAGAGTTTACCATCG 40760 Query 364862 TTAATAAGTACCT 364874 | || |||||||| Sbjct 40759 TGAACAAGTACCT 40747 >seq13 Length=222908 Score = 84.2 bits (92), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGT----TCATTCGCGGAACG 22493 || ||||| ||||||||||| |||| || ||| || |||| | |||| || Sbjct 45948 AAGAAGGCGAGTTGGGCGCTGAGATGG-TGCGACCCGAAAGTGTCCTCATACCCGGAGCG 46006 Query 22494 TCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTT 22553 |||| | ||||| || | || || || || ||||| || || | ||||| | ||||| Sbjct 46007 TCTTCTGGCATTCGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTT 46066 Query 22554 TTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCG 22613 ||||| || || |||| | ||||| ||||| | || || || ||| | || || || Sbjct 46067 CTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAACGAGCTCATCAGTCG 46126 Query 22614 AGATGAGGGTCTTCATACCGATTTTGCGTGTATG 22647 ||||| ||| | || || || ||||| ||| || Sbjct 46127 TGATGAAGGTATGCACACAGACTTTGCTTGTCTG 46160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303321704493620