Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq250 163 3e-35 seq468 141 9e-29 seq625 113 4e-20 seq328 111 1e-19 seq68 96.9 3e-15 >seq250 Length=44145 Score = 163 bits (180), Expect = 3e-35 Identities = 740/1149 (64%), Gaps = 42/1149 (4%) Strand=Plus/Plus Query 145051 GTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGT 145110 ||||| || |||| |||||| || || | ||| || || |||| ||| || || Sbjct 40749 GTACTTGTTCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTGGAGGT 40808 Query 145111 GAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTA 145170 ||| ||||| | |||||||||||| || ||||| || || || | || || ||||| Sbjct 40809 GAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCATCGG 40868 Query 145171 CGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCA 145230 ||| |||| | |||||||||||||||| ||| | | ||||| |||| | |||| Sbjct 40869 CGCGACCAGGAGCGAATTGCGCAGGCCGTTCTTGACCACCTTCTCCTTAAGCGCAGCCCA 40928 Query 145231 ATCCCATAG---CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCT 145287 ||||| || || | ||| | ||||||||||| ||| |||| || || |||| ||| Sbjct 40929 GTCCCACAGACCGGAGGAAGGCGTGACGTCCCACATATCGAACTGGAAGATACCCTTGCT 40988 Query 145288 GGC-GGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGT-TTTGGCGAGCTCGCAAC-T 145344 ||| || | ||| ||||| || || | ||||| | |||| || || || | Sbjct 40989 GGCAGGCGAACCCTGGAAAG--TCTCGTACGGGCCCAATTCCGTGGCCAGTTC-CATCGA 41045 Query 145345 CGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTC 145404 || ||||| || || | || || |||||| || | | |||||||| ||| || Sbjct 41046 CGTCTCCATAGAAGCGTAGTAGATGGTCTCGAAGATATTCTTGTTGAGCTCACGCGCCTC 41105 Query 145405 ATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCAC 145464 |||||| ||| | | || || | ||||| || || || ||||| | || | Sbjct 41106 CGGACTCTCGAACGCAAAGTCCATGAGGATGAAAGCGTCCGCAAGGCCCTGCACACCAAT 41165 Query 145465 GCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATA---GGATA-TCGAT 145520 || | || || || ||||||| | | || ||| ||| || || | | | Sbjct 41166 ACCAACAGGACGGTGACGCATGTTGGAATTGCGAGC---CTCAATAACGGGGTAGTAGTT 41222 Query 145521 TACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTT 145580 || |||||| | || |||| ||| || | ||||| | | || ||| | Sbjct 41223 GAC-GTCGATGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGACCTCATACAGCTTCT 41281 Query 145581 CAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAAT 145640 ||| ||| || | ||||||| | | || || | |||||||| | Sbjct 41282 TGTAGTTGAACACGGCGTTCTCAACGA------ACTTGGGGAGCGCCACGGACGCCAAGT 41335 Query 145641 TACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTA 145699 | || || ||| || || |||| || |||| | | | || |||||| ||||| Sbjct 41336 TGCACACGGCCACTTCATCGGGCGACG-TGTACTCCATCACTTCACAGCACAAGTTGCTC 41394 Query 145700 CATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGC 145759 | || || || || || ||||| || || | |||| ||||||||||| ||| Sbjct 41395 GAGCGAATCGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCGGCGTCCTTGTACAGC 41454 Query 145760 ATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATA--AAACGGTGCAAGTCCTGCG 145817 ||| | || |||| ||||| | ||||| |||| ||| ||| || | || | Sbjct 41455 ATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAAC--CACAGCTGTTGAG 41512 Query 145818 CACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACG 145877 || | || || |||||| || ||||| ||| | ||| ||| ||| Sbjct 41513 CATTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACT 41572 Query 145878 CGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGC 145937 | || |||| ||| | || |||||| || ||||||||| | || ||| || Sbjct 41573 CCTCTCCCCAGCACTCGTATAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGC 41632 Query 145938 CGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGT--C 145995 | ||||| | || |||| ||| |||| ||| ||||||||||| || || | ||||| | Sbjct 41633 CATTGGCCTCCACACGCTTCATGAACAGATCCGGCACCCACAGAGCATAGAACAAGTCAC 41692 Query 145996 GCGCGCTTTGCAATCCTCAGCACCCATGTTTC--GCTTCAAAT-TAAGCACACTATAGAT 146052 | || | |||| ||| | ||||| ||| || ||||| ||| || | | | | Sbjct 41693 GTGCACGGTGCA--GCTC-GTTACCATGGTTCTTGC-GCAAATCCAAGAACTC-AAACAC 41747 Query 146053 GTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCTG 146109 || |||||||||||||| | ||| | || | | ||| || ||||| |||||||| Sbjct 41748 ATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTG 41807 Query 146110 GTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTAC 146169 |||||||| ||| || | | |||||| || |||| |||||| || |||| ||| Sbjct 41808 GTCCACGTATCGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGA 41867 Query 146170 GCCGTTCGT 146178 ||||||||| Sbjct 41868 GCCGTTCGT 41876 >seq468 Length=19833 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| || ||||| | || | || |||||||| || |||||||| ||||| Sbjct 19706 GCCACCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 19647 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || || Sbjct 19646 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 19587 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| |||||||||||| | | || | | |||| | ||| | Sbjct 19586 GATGCCTTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTCCAC 19527 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| || | || || || || || || || || || |||||||| Sbjct 19526 GTCGAGCGTGATAGTCTTGCCAGTCAGTGTCTTCACAAAGATCTGCAT 19479 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| ||||| | || | || |||||||| || |||||||| |||||| Sbjct 15399 CCGCCACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 15458 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 15459 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 15518 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| |||||||||||| | | || | | |||| | ||| | | Sbjct 15519 ATGCCTTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTCCACG 15578 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || || || || || || || || |||||||| Sbjct 15579 TCGAGCGTGATAGTCTTGCCAGTCAGTGTCTTCACAAAGATCTGCAT 15625 >seq625 Length=11448 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || || ||||| |||||| ||||||||||| ||| ||| Sbjct 2531 CCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 2590 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | |||||||||||| || || ||||| || ||||| |||||||||||||| | | Sbjct 2591 TCAGACGCTGCTGGTCAGGTGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 2650 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | || | | ||| | ||||| || | ||| || || || || || || || | Sbjct 2651 CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 2710 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 2711 AGATCTGCATGA 2722 >seq328 Length=32478 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| ||||| | || | || |||||||| || |||||||| |||||| Sbjct 139 CCGCCACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 80 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 79 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 20 Query 131128 ATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 19 ATGCCTTCCTTGTC 6 >seq68 Length=108243 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| | || | || |||||| || |||||||| || | Sbjct 97536 CCACCACGCAGACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 97477 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 97476 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 97417 Query 131128 ATTCCT 131133 |||||| Sbjct 97416 ATTCCT 97411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472001530694400