Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq13 221 2e-52 seq460 170 4e-37 seq364 102 2e-16 >seq13 Length=222908 Score = 221 bits (244), Expect = 2e-52 Identities = 576/862 (67%), Gaps = 31/862 (4%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| |||||||| | ||||| |||| || ||||| || Sbjct 46423 TCGAAGAAGTTGGTCTTGCCCTGTAGAGAGATCATGTCCATCCAGTCAAACGGGTTCTTG 46364 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TACGAAGATGCGGTCTGCCACAAACTCCAG 251681 | ||||| ||||| ||||| | ||| | | |||||||||||| ||||| | Sbjct 46363 ACGTTGTAGATCTTGGACACACCAAGCGAATAC-AGCAGGCGGTCTGCCACGAACTCAAT 46305 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGA---ATTGCCTCAC 251737 ||||| | ||| || | ||||||||||| |||| | || ||| | | ||||| Sbjct 46304 GTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCACTGGGAGCGAGTCGCTCAC 46245 Query 251738 AGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCAC---CTGTGCCA 251794 ||| || | |||| | || || || | ||| | | ||| ||| || Sbjct 46244 ----GAACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTCGTGCACACGCTGCTCCG 46189 Query 251795 GAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCT 251854 | ||||||| || ||||||| ||||||| || |||| | | ||||| ||| | Sbjct 46188 G---CAGCTTGGTCACCAGCTTCGAGTACAACAGACAAGCAAAGTCTGTGTGCATACCTT 46132 Query 251855 CGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGA 251914 | || |||||||||| ||||||||| | | ||| |||||||| | ||||| ||| ||| Sbjct 46131 CATCACGACTGATGAGCTCGTTGGAGAAGCTCAGACCAGGCATGAGACCACGCTTCTTGA 46072 Query 251915 GCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAA 251974 |||||||||| | ||||||||| || ||||| | | ||||| ||| | |||| | Sbjct 46071 GCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCTCCACAGCTGCGAATGCCA 46012 Query 251975 CAAGGCGCTCAGCAAACG-----ACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGC 252029 ||| ||||| | | | |||| || | || | | || | ||||| || Sbjct 46011 GAAGACGCTCCGGGTATGAGGACACTT-TCGGGTCGCACCATC-TCAGCGCCCAACTCGC 45954 Query 252030 CTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATC 252089 |||||| || ||||| || || |||||| | || || | || || | Sbjct 45953 CTTCTTGGTCACACACGGGATGGTCTCAATTGCACGCAGCAGGTGGTCCTTTTCCACAGC 45894 Query 252090 GTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAA 252149 ||||| |||| || |||| || || ||||||| ||| || |||||| || || Sbjct 45893 GTCCTTGATGTACGTGTCAATGAGCAGCGAGTACACCTCTGAGTGGATGTTCTCAATGGC 45834 Query 252150 CATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTT 252209 |||||| | | ||||| ||| || ||| | ||||| || |||||| | Sbjct 45833 AATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGCACTTGTACTTCATTGCTAAAGTTCAT 45774 Query 252210 TGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAA-GCCAAGAATGGTCTTGA 252268 || | |||||| |||| |||||||| ||| | |||||||| |||||| | | ||||| Sbjct 45773 GGCCAAGTTCTCGTTCACGATGCCATCACTGGCGGCAAAGAAGGCCAAG-ACGTGCTTGA 45715 Query 252269 TGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAG 252328 ||||||||||||| | ||| |||| || | |||||| | ||| || || Sbjct 45714 TGAAGTGACGCTCGTTGTCTGTGAG---GTTTCCCCAGTCCTTGAGGTCGTGTACCAAGT 45658 Query 252329 GAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCA 252387 | |||||| | |||||||| ||| | |||||||||||||||| ||| |||| || Sbjct 45657 CCAGCTCTTCCGCAGTCCAGAAGCTGGCCTCCGCCTTCTTGTACATCTGC-CACACGTCG 45599 Query 252388 GGGTACTTGATTGGGAA-AGCA 252408 | | || ||| ||||| |||| Sbjct 45598 TGCTCCTGGATGGGGAACAGCA 45577 >seq460 Length=20282 Score = 170 bits (188), Expect = 4e-37 Identities = 659/1020 (65%), Gaps = 33/1020 (3%) Strand=Plus/Minus Query 279350 GGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTAC 279409 ||| || || ||||||| ||||||||||| || ||||| | ||||||||| ||| | Sbjct 15527 GGACCTTTGCAACTGTGAGTTCTCGCTCGCTTACGGTGGTATGATTCTGCTGAACAACGC 15468 Query 279410 CCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAA 279469 ||| || | | ||||||||| |||| || ||||| ||||||||| || ||||| Sbjct 15467 CCGTCTTCGCCTGAAGCGTGGCCACCGTTACGGTCTGTGCGGTCCCAACGGTTGCGGTAA 15408 Query 279470 GAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCC-TAACGCATCTG 279528 | || || |||||||| ||| | ||||| ||||| || || || || | ||| | | Sbjct 15407 GTCTACGCTTATGCGCGCTATTTCCAACGGCCAGCTTGACGGCTTCCCGTCGCGCGAC-G 15349 Query 279529 AGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGTGT 279588 || | | ||| |||| || |||||| || | | | || | || |||| Sbjct 15348 AGCTGAAGACTGTGTTCGTCGAGCACAACTTGCAGGCTTCGGAGGCCGAGCTGTCTGTTG 15289 Query 279589 TCGACTTCCTAACGTCTGACAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAATCATCC 279648 | |||||| | || || | | | | ||| | | ||| || |||| || | Sbjct 15288 TGGACTTCATCCTGTTCGATGAGGACCTGAAGGACA-CTCCTCGCC--AGGAGGTCGTTG 15232 Query 279649 AGAAACTGGAGGCCAATGGTTTTGATGAAAGA-ATGCGTAATCTGCCAGTAGGTTCTCTG 279707 | | || | | ||| || | || |||| | | | || || | || Sbjct 15231 ACACGCTTACCGGCG-TGGACTTCACCGCTGAGATGCAAGCCCAGGCTGTGGGCACCCTT 15173 Query 279708 TCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTC 279767 |||||||||||||||||||| |||| || | || || || || | | ||||| | Sbjct 15172 TCGGGTGGTTGGAAGATGAAACTGGAGCTGGCCCGTGCTATGCTTCAGAAGGCCGACATT 15113 Query 279768 CTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCC 279827 || || ||||||||||| || |||||| |||| || ||||| || ||||| | | | Sbjct 15112 CTGCTTCTTGATGAGCCGACGAACCACTTGGATGTCAAGAACGTTGCGTGGCTCGAGAAC 15053 Query 279828 TACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTA 279887 ||||| || | ||| ||| || | | |||| || || |||||||| ||||||| Sbjct 15052 TACCTGACGAACCTGCCGAACGTGACGAGCATCATGGTGTCCCACGACTCCAGCTTCCTT 14993 Query 279888 GATGCCGTGTGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAGCTCTCCAAGCAC 279944 || | || || | |||||||||||| ||| | || |||||| ||| |||| Sbjct 14992 GACACGGTCTGTACGAACATCATTCACTACGAGACCCGTAAGCTGAAGATCTACAAG--- 14936 Query 279945 ATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTG 280004 |||||||| || ||||||| | |||||||| |||||||| || ||| Sbjct 14935 ---GGCAACCTTTCCAAGTTCGTGGAGGTGAAGCCTGAGGCCAAGGCCTACTACGAGCTG 14879 Query 280005 AAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATC-ACATC 280063 ||| || ||| || || ||||| ||||| || || || | | |||| | | | Sbjct 14878 GAGGCTGCTACCTTCAGGTTCACGTTCCCGGAGCCTGGTTTCCTTGCTGACATCAAGAAC 14819 Query 280064 AAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATC---CCAATGGCCC 280120 || || || | |||| | ||| | || | | || | | ||||| Sbjct 14818 AAGGGTAAGC-CCATCA------TTCGTCTGACCAACTGTACCTACCAGTACCCTGGCCG 14766 Query 280121 CAAC--ATCTTC-AGCAGTGTCAACTCG--CAGGT-TTCTATGAACTCACGGATTGGTGT 280174 || | | || | || || ||| | || || || || || |||| || Sbjct 14765 TGACAAACCGTCGATCAACAACATTTCGGTGACGTGCGCTCTGTCATCGCGTATTGCCGT 14706 Query 280175 CATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCA 280234 |||| ||||| ||||| |||||||| || || ||||| | ||||| || ||| | Sbjct 14705 GCTTGGCCCCAACGGTGCCGGTAAGTCGACGCTGATCAAGATGCTGACGGGTGAGGTTGA 14646 Query 280235 GGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCA 280294 |||| || | || |||||||| || |||||| | ||||||||||||||||| Sbjct 14645 ACCCACCATCGGTACGGTATGGAAGCACCCTTCCATGCGTTTCGCTTACGTCGCTCAGCA 14586 Query 280295 CGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354 ||||||||| ||||| || | ||||| ||| |||| | ||| ||||| |||||||| Sbjct 14585 CGCTTTCCATCACATTGAAGAGCACCTCGACGAGACTGCCAACGCCTACATCCAGTGGCG 14526 >seq364 Length=28166 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 1733 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 1674 Query 142563 CCCCAC 142568 |||||| Sbjct 1673 CCCCAC 1668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027811646906310