Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq460 149 1e-30 seq13 116 8e-21 seq117 87.8 4e-12 >seq460 Length=20282 Score = 149 bits (164), Expect = 1e-30 Identities = 679/1057 (64%), Gaps = 51/1057 (5%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| ||||| || ||||||| ||||| || ||||| ||| ||| || Sbjct 14501 CTCCTTGTCCTCACCAGACTGGAAACGCCACTGGATGTAGGCGTTGGCAGTCTCGTCGAG 14560 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || || || ||||| |||||||| ||||| || |||||||| | |||||| || || Sbjct 14561 GTGCTCTTCAATGTGATGGAAAGCGTGCTGAGCGACGTAAGCGAAACGCATGGAAGGGTG 14620 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || | ||| |||||| ||| | | ||||| |||| ||| || || || Sbjct 14621 CTTCCATACCGTACCGATGGTGGGTTCAACCTCACCCGTCAGCATCTTGATCAGCGTCGA 14680 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAG------CGATACCTG 333547 || || ||||| || ||| | ||| |||| | || ||| || ||| Sbjct 14681 CTTACCGGCACCGTTGGGGCCAAGCACGGCAATACGCGATGACAGAGCGCACGTCACC-- 14738 Query 333548 GGCATTCACGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGC 333606 | | | |||| || | | |||| || || || |||| | | ||| Sbjct 14739 -GAAATGTTGTTGATCGACG----GTTTGTCACGGCCAGGGTACTGGTAGGT-ACAGTTG 14792 Query 333607 GT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGG 333665 || || ||||||| |||| |||| | | ||||| || ||||| ||| Sbjct 14793 GTCAGACGAATGATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCAGGCTCCGGG 14852 Query 333666 AACTTCCACGTG---GTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGC 333722 ||| | || || || | ||| || ||||||| | | || || | Sbjct 14853 AACGTGAACCTGAAGGTAGCAGCCTCC---AGCTCGTAGTAGGCCTTGGCCTCAGGCTTC 14909 Query 333723 TTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAA 333782 || |||||||| ||| || || |||||||| |||||||||| || | ||||| Sbjct 14910 ACCTCCACGAACTTGGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGGGTC---TCGTAG 14966 Query 333783 TGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCAC 333842 || || || || || || | ||| ||||| | ||||||||| ||||| || | || | Sbjct 14967 TGAATGATGTTCGTACAGACCGTGTCAAGGAAGCTGGAGTCGTGGGACACCATGATGCTC 15026 Query 333843 GAAACGTCCTTAAGGTTGATCAGGTA-TTCAATC-AGCCACCTCACGTTAGACACAGAAA 333900 | |||| | ||||| ||||||| ||| || |||||| ||||| ||| | Sbjct 15027 GTCACGTTCGGCAGGTTCGTCAGGTAGTTC--TCGAGCCACGCAACGTTCTTGACATCCA 15084 Query 333901 GATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAA 333960 ||||| |||||||| |||||||| || | | || ||| | ||||| ||||| || | Sbjct 15085 AGTGGTTCGTCGGCTCATCAAGAAGCAGAATGTCGGCCTTCTGAAGCATAGCACGGGCCA 15144 Query 333961 GAGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTG---GGGCAGATTGGCGCT 334017 | | |||||||| ||||| || || ||||| ||| | | |||| ||| || Sbjct 15145 GCTCCAGTTTCATCTTCCAACCACCCGAAAGGGTGCCCACAGCCTGGGC---TTGCATCT 15201 Query 334018 CAATATCAAAGCCAAC--CGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTT 334075 || ||| | || || | || || |||| || | |||| | ||| Sbjct 15202 CAGCGGTGAAGTCCACGCCGGTA--AGCGTGTCAACGACCTCCTGGCGAGG---AGTGT- 15255 Query 334076 TTCCTTTACTTGTTCATC--ATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGAC 334133 |||| | | ||||| | || |||||||| | | || || | | || || Sbjct 15256 --CCTTCAGGTCCTCATCGAACAGG--ATGAAGTCCACAACAGACAGCTCGGCCTCCGAA 15311 Query 334134 CCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATC-CGCAGAGGGGAACCCTTC 334192 | | | | ||| || ||| | |||| |||| | || ||| || ||||| || || Sbjct 15312 GCCTGCAAGTTGTGCTCGACGAACACAGTCTTCAGCTCGTCGCGC-GACGGGAAGCCGTC 15370 Query 334193 AAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACA 334252 |||||| ||||| |||||||||||| || || || ||||| ||||| || || || Sbjct 15371 AAGCTGGCCGTTGGAAATAGCGCGCATAAGCGTAGACTTACCGCAACCGTTGGGACCGCA 15430 Query 334253 CAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCC 334312 ||||||||| |||| ||||||||||| | || | |||||||| ||||| | || Sbjct 15431 CAGACCGTAACGGTGGCCACGCTTCAGGCGAAGACGGGCGTTGTTCAGCAGAATCATACC 15490 Query 334313 ACCATATGCCAGAGAAAATTCACAATCACACAGATCC 334349 ||| || || || || || ||||| | || || ||| Sbjct 15491 ACCGTAAGCGAGCGAGAACTCACAGTTGCAAAGGTCC 15527 >seq13 Length=222908 Score = 116 bits (128), Expect = 8e-21 Identities = 258/382 (68%), Gaps = 4/382 (1%) Strand=Plus/Plus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 || ||| ||||||| ||||| ||| ||| | |||||||| || | | || ||| Sbjct 46053 TTTTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAAC 46112 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465 ||| |||||||||| || || || | ||| | | || | | || |||| || ||| Sbjct 46113 GAGCTCATCAGTCGTGATGAAGGTATGCACACAGACTTTGCTTGTCTGTTGTACTCGAAG 46172 Query 243466 CTCCAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 || || |||||| || | | || || | | || ||| || || || | | Sbjct 46173 CTGGTGACCAAGCTGCCGGA-GCAGCGTGTGCACGAGATTATCCGTGACGCTGTGAAGAT 46231 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 |||| | || ||| | ||||| | | ||| ||| || ||||||||||| | || Sbjct 46232 CGAACACGAGTTCGTGAGCGACTCGCTCCCAGTGGAGCTGATCGGCATGAACTCGGCGCT 46291 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 |||| | |||||||| || ||||| || |||||| | | |||||||| || | Sbjct 46292 CATGTGCCAGTACATTGAGTTCGTGGCAGACCGCCTGCTGTATTCGCTTGGTG-TGTCCA 46350 Query 243645 AG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703 || | |||||| ||||||||| |||| || ||||| | || || || || || || | Sbjct 46351 AGATCTACAACGTCAAGAACCCGTTTGACTGGATGGACATGATCTCTCTACAGGGCAAGA 46410 Query 243704 CTAACTTCTTCGAAAAGCGTGT 243725 | ||||||||||| |||||||| Sbjct 46411 CCAACTTCTTCGAGAAGCGTGT 46432 >seq117 Length=76008 Score = 87.8 bits (96), Expect = 4e-12 Identities = 189/281 (67%), Gaps = 4/281 (1%) Strand=Plus/Minus Query 297436 TGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTG 297495 ||| || || || || | ||| ||| |||||| || || || |||| | || ||||| Sbjct 14342 TGTAAAGATGTAACGAGGACTAGCGGCATCCTTGCCTCCTTGTAATCGGGTGCCAAACTG 14283 Query 297496 GCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCAC 297555 ||| || ||| || | |||||| |||||||| ||||| || | ||| || Sbjct 14282 GCCTGATGGGTACAGTAAGGGAAGATTATTGGAACCGACATAGTCCTGCGCCATGTTAAC 14223 Query 297556 GATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCT--CTGCAACGTAA 297613 || ||| |||| || || ||||| ||||||||||| | |||| ||||| ||| Sbjct 14222 AATCGTCGAGTGCAACGAAGCCTCGCCGTGGTGATAGGCCGTGTGCTCACTGCA--GTAG 14165 Query 297614 CCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATC 297673 || | ||| || ||||| || || ||| | |||||||| | || ||| | Sbjct 14164 CCCGCAAGCTGGGCCACCTTGACCTCACGCGTAAGCTTGCGCTTCAGGCATGCATAGAGA 14105 Query 297674 ACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGG 297714 || || || || ||| |||| ||||||||| || ||||| Sbjct 14104 ACCTTGCGCTGCGAAATCTTGAGACCATCAACCACTGACGG 14064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102853010458500