Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq13 168 8e-37 seq250 156 5e-33 seq89 82.4 9e-11 >seq13 Length=222908 Score = 168 bits (186), Expect = 8e-37 Identities = 391/585 (67%), Gaps = 12/585 (2%) Strand=Plus/Minus Query 125752 CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 125811 |||| ||| || || || ||||||||||||||||| ||||| || | | ||| | Sbjct 46448 CTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGTAGAGAGATCAT 46389 Query 125812 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 125871 ||||| | ||||| |||||||| ||| | || | | ||| |||| | | || Sbjct 46388 GTCCATCCAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAG 46329 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 || || || | ||| |||||||||||| |||| | | |||||||| ||||| || Sbjct 46328 CAGGCGGTCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAG 46269 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | |||||||| ||| | |||| | | || || | ||| || || || | || Sbjct 46268 CTCCACTGGGAGCGAGTCGCTCACGAACTCGTGTTCGATCTTCACAGCGTCACGGATAAT 46209 Query 125992 GGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGG---- 126047 |||| | | | || || ||| || ||| |||| | || | Sbjct 46208 CTCGTGCACACGCTGCTCC---GGCAGCTTGGTCACCAGCTTC--GAGTACAACAGACAA 46154 Query 126048 -CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 |||| ||| ||| | ||| || ||||| |||||| || || ||||||| ||| || Sbjct 46153 GCAAAGTCTGTGTGCATACCTTCATCACGACTGATGAGCTCGTTGGAGAAGCTCAGACCA 46094 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||||||||| |||||||| | |||||| || | ||||| || ||||||||||||||| Sbjct 46093 GGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATT 46034 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTT-GTGTCAAA 126225 ||||||||| ||||| || | |||||||| | | ||| | ||||| | ||| | Sbjct 46033 CCCTCCACAGCTGCGAATGCCAGAAGACGCTCCGGGTATGAG-GACACTTTCGGGTCGCA 45975 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 126285 ||| ||| |||||| |||||| || | |||||||| ||||| || || | Sbjct 45974 CCATCTCAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAATTGCACGCAG 45915 Query 126286 GAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 126330 || | | |||||| | || ||||||||| | || ||||| Sbjct 45914 CAGGTGGTCCTTTTCCACAGCGTCCTTGATGTACGTGTCAATGAG 45870 >seq250 Length=44145 Score = 156 bits (172), Expect = 5e-33 Identities = 467/714 (65%), Gaps = 15/714 (2%) Strand=Plus/Plus Query 114550 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTA 114609 ||| ||||| | ||||| || || ||||| ||| || |||||||| |||||| | Sbjct 41400 AATCGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCGGCGTCCTTGTACAGCATGAA 41459 Query 114610 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCGGCTG-GCA 114668 ||| |||||||| | || | | |||||||| ||| | || | || ||| Sbjct 41460 AGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCACA-----GCTGTTGAGCA 41514 Query 114669 CAG--TGGCGTT--GGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCT 114724 | || | | ||| || || || ||||||||| | || | || ||||| Sbjct 41515 TTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTCC 41574 Query 114725 TCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCA 114784 || ||| | ||| | || || || |||| | || ||||| | | ||| | ||| Sbjct 41575 TCTCCCCAGCACTCGTATAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCCA 41634 Query 114785 CCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGA 114844 |||| |||||||||||||| || || || | ||| ||||| |||| | || || Sbjct 41635 TTGGCCTCCACACGCTTCATGAACAGATCCGGCACCCACAGAGCATAGAACAAGTCACGT 41694 Query 114845 -CAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 114903 || | || || | | || || || ||||| ||||| || || | | ||| || Sbjct 41695 GCACGGTGCAGCT-CGTTACCATGGTTCTTGCGCAAATCCAAGAACTCAAACACATCAGC 41753 Query 114904 GTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTAC 114960 ||||||||||||||| || | ||| | ||| ||||| || || ||| |||||| || Sbjct 41754 GTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGGTCCAC 41813 Query 114961 ATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATT 115020 || | || || | ||||| || || ||||| || ||||| || | || ||| || Sbjct 41814 GTATCGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAGCCGTT 41873 Query 115021 TGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCC 115080 || || || || ||| | |||| || | || || || ||||| || || Sbjct 41874 CGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCAATGCCTCC 41933 Query 115081 TGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTC 115140 |||||||| ||||| ||| |||| | ||| || | || || || || || ||||| Sbjct 41934 CGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGTC 41993 Query 115141 ACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAA 115200 | ||| | || | | |||||| |||| |||||| | ||| |||||||| ||||| Sbjct 41994 ATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGAGTACCAGCATTGAA 42053 Query 115201 GAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTC 115254 || || || || |||||| |||| | ||| ||||| ||||| ||||| Sbjct 42054 CAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTC 42107 >seq89 Length=92099 Score = 82.4 bits (90), Expect = 9e-11 Identities = 119/167 (71%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 172798 CTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAAC 172857 ||| ||||| || || || |||||||||| || | ||||| || | ||||||| | || Sbjct 24880 CTTACCACGCAGCGGAAATACACCGTAGTAGTCTCTCCCAACGACGGCAAGACCACCCAC 24821 Query 172858 TGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACA---CTTTCCAGATTG 172914 || | || || || ||||||||||| || | ||| || || || ||| || | Sbjct 24820 AGCTACTGTTTTAGCTGAATCACCCTCTGTAAGGATAAGTGTGCAGTCCTTGCC---CTT 24764 Query 172915 TGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATACCAGTAA 172961 || || || || | ||| |||||||| | ||| |||||||| |||| Sbjct 24763 CGCAGTGCCGGCGTGGTTGGCATCGTCTAGCTTTGGAATACCCGTAA 24717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597339338182800