Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq250 298 5e-76 >seq250 Length=44145 Score = 298 bits (330), Expect = 5e-76 Identities = 1083/1689 (64%), Gaps = 39/1689 (2%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 |||||||| || |||||||| || || || || ||||| |||||||||| ||| || Sbjct 42068 GCCACCCCCACGCTGTTCAATGCTGGTACTCCACGTCCACAATTGTCTTCGTGCTTCTTG 42009 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | ||| ||||| || || |||| |||| || || | |||||| | Sbjct 42008 TTGGCCATGCAGGATGACTCTATTGAAGGCATTTATGACACTCTGAAACAGTGTGCGTGC 41949 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | ||||| || || || |||||| | ||| || | || || | | Sbjct 41948 ATCTCCAAGTGGGCGGGAGGCATTGGCATCAGTATGCACAACATCCGAGCTACTAACAGC 41889 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||||||||| || || ||| | ||||||||| || |||| ||||| || || || ||| Sbjct 41888 TACATCCGCGGCACGAACGGCTCGTCCAACGGCATCATCCCCATGCTGCGAGTGTTTAAC 41829 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 | |||| || ||||||||||||||||| || | | ||||| || || ||| | ||| Sbjct 41828 GATACGGCACGATACGTGGACCAGGGTGGAGGTAAACGCAAGGGATCATTTGCGATTTAT 41769 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || || || |||||||| || ||| | ||| | || |||| |||||||| || ||| Sbjct 41768 CTGGAACCGTGGCACGCTGATGTGTTTGAGTTCTTGGATTTGCGCAAGAACCATGGTAAC 41709 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || ||| | | || | ||| | ||||| ||||| |||||||| || || || ||||| Sbjct 41708 GAGCTGCACCGTGCACGTGACTTGTTCTATGCTCTGTGGGTGCCGGATCTGTTCATGAAG 41649 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 || || ||| || | |||||| | || |||||||| || |||||| || | | Sbjct 41648 CGTGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAGGCTCCCGGTCTATAC 41589 Query 94372 GACGTTTGTGGATCGCGTTTTGAAGAC-TTGTATGCTCGTTACGAATCGCAGGGCAAGGC 94430 || || ||| | | || |||| ||| || ||||| | ||| || Sbjct 41588 GAGTGCTGGGGAGAG-GAGTTCGAGACGCTGTTTGAGAAGTACGAGCGTGAAGGCCGCGC 41530 Query 94431 CAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGAC 94490 | | ||| || ||||| |||||||| || |||||| ||| | ||||| Sbjct 41529 CCGCAAGACAATCAATGCTCAACAGCTGTGGTTCGCTATTCTGGACGCGCAGATTGAGAC 41470 Query 94491 GGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCT 94550 ||| ||| | ||| ||| ||||||| | | |||| |||||||||||||||| |||| Sbjct 41469 GGGCGTGCCTTTCATGCTGTACAAGGACGCCGCCAACCGCAAGTCCAACCAGCAGAACCT 41410 Query 94551 CGGGGTGAT---CAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607 ||| ||| | |||| || ||||| || | | ||||| || || || || Sbjct 41409 CGGCACGATTCGCTCGAGC---AACTTGTGCTGTGAAGTGATGGAGTACACGTCGCCCGA 41353 Query 94608 CGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTA 94667 || | || ||||| ||| ||| ||| | || ||| ||||| |||| | Sbjct 41352 TGAAGTGGCCGTGTGCAACTTGGCGTCCGTGGCGCTCCCCAAGTTCGT-TGAGA-----A 41299 Query 94668 CACGTCTACTGCTTCGTTCGATCTGGAGGAGCT-TGTGAACTTCGCGGGAAGGATGGTC- 94725 | || |||| | || |||| | ||| | || |||| || || Sbjct 41298 C---------GCCGTGTTCAACTACAAGAAGCTGTATGAGGT---CGTCAAGG-TGATCA 41252 Query 94726 --TTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACT 94783 |||||||||| ||| |||||| |||| ||||||||| ||||| || | Sbjct 41251 CACGCAACCTGAACAAGGTCATCGACGTCAACTACTACCCCGTTATTGAGGCTCGCAATT 41192 Query 94784 CAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGA 94843 | ||| || || || || | || || || || ||||| | |||||||| | | Sbjct 41191 CCAACATGCGTCACCGTCCTGTTGGTATTGGTGTGCAGGGCCTTGCGGACGCTTTCATCC 41132 Query 94844 TGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAA 94903 | ||| | | | ||| | || ||| | | || ||| || ||||| | Sbjct 41131 TCATGGACTTTGCGTTCGAGAGTCCGGAGGCGCGTGAGCTCAACAAGAATATCTTCGAGA 41072 Query 94904 GCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCAC 94963 ||| || |||| | ||| | || | | |||||| |||| || || Sbjct 41071 CCATCTACTACGCTTCTATGGAGACGTCGATGGAACTGGCCA---CGGAATTGGGCCCGT 41015 Query 94964 ACGAATCGTTCCGCGGATCGCCCTTGGAAC-AGGGCATTTTTCAGTTCGACCTCTGGGGT 95022 |||| | |||| || ||| ||| | | |||| || || |||||||| | |||| Sbjct 41014 ACGAGACTTTCCAGGGTTCG-CCTGCCAGCAAGGGTATCTTCCAGTTCGATATGTGGGAC 40956 Query 95023 GTGAAGC---CCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACAC 95079 || | || |||| ||||||| ||||||| || || | | || |||| || Sbjct 40955 GTCACGCCTTCCTCCGGTCTGTGGGACTGGGCTGCGCTTAAGGAGAAGGTGGTCAAGAAC 40896 Query 95080 GGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTT 95139 || || || |||| || || || || ||||| ||||| || ||||| |||||||| Sbjct 40895 GGCCTGCGCAATTCGCTCCTGGTCGCGCCGATGCCGACGGCGTCTACGGCACAGATCCTC 40836 Query 95140 GGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCC 95199 || || |||||||| ||||||| |||||||||||| |||||||| | || ||||| || Sbjct 40835 GGTAATAACGAGTCTATCGAACCGTTCACCTCCAACATGTACAACCGCCGCGTGCTTGCG 40776 Query 95200 GGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGG 95259 || || || || || | |||||| |||| | || |||| |||||||||||| Sbjct 40775 GGAGAGTTTACCATCGTGAACAAGTACCTGATGAATGAGCTGATTGAGCTGGGTGTGTGG 40716 Query 95260 GGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAA 95319 | | |||| ||||| | | | | ||| || || ||||| | Sbjct 40715 GCTCCTGAGGTGCGTAACCAGATCTTGAATGACGGCGGTTCGGTGCAGAATGTGAGCTCC 40656 Query 95320 ATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATA 95379 || ||| | || |||||| | |||||||| |||||||||||| |||| ||| Sbjct 40655 ATTCCGAACCACGTCAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAAGTCGATT 40596 Query 95380 CTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNNNNN 95439 || |||| | || | || || ||| |||||| ||||| Sbjct 40595 CTGGACCTGTCTGCGGATCGTGGTGCCTACATCTGTCAGAGTCAGTCGCTGAACATTCAC 40536 Query 95440 ATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAGGGT 95499 || ||||| || | | || | || || ||| || |||| ||||| ||||| Sbjct 40535 ATCGCCGAACCGACAAAAAGCAAGCTTACATCGATGCACTTTTACGCGTGGAAGAAGGGG 40476 Query 95500 CTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATACAGTTCGCC 95559 |||||||| || ||||| || |||| | || || || ||| |||| |||||| || Sbjct 40475 CTCAAGACGGGCATGTACTACATGCGCGGACGCCCGAAAGCTGACGCCATCCAGTTCACC 40416 Query 95560 CTAGAAAAG 95568 | || ||| Sbjct 40415 GTGGACAAG 40407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494711388483600