Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq468 131 2e-25 seq13 122 9e-23 seq625 111 2e-19 seq328 84.2 2e-11 >seq468 Length=19833 Score = 131 bits (144), Expect = 2e-25 Identities = 154/205 (75%), Gaps = 5/205 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||| || || || |||| Sbjct 15432 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCG 15491 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| ||||| || || || ||||| ||||| |||||| || || | | Sbjct 15492 AAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACA 15551 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | | ||||| | |||||| |||| ||| | || || |||||||| || || Sbjct 15552 TTG-TCGATCGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTTGCCAGTCAGTGTCTT 15610 Query 138600 TACAAAAATCTGCA---TGGCTTAT 138621 ||||| ||||||| |||||||| Sbjct 15611 CACAAAGATCTGCATCTTGGCTTAT 15635 Score = 129 bits (142), Expect = 6e-25 Identities = 147/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||| || || || |||| Sbjct 19672 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCG 19613 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| ||||| || || || ||||| ||||| |||||| || || | | Sbjct 19612 AAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACA 19553 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | | ||||| | |||||| |||| ||| | || || |||||||| || || Sbjct 19552 TTG-TCGATCGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTTGCCAGTCAGTGTCTT 19494 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 19493 CACAAAGATCTGCAT 19479 >seq13 Length=222908 Score = 122 bits (134), Expect = 9e-23 Identities = 291/437 (67%), Gaps = 11/437 (3%) Strand=Plus/Plus Query 52405 TGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACA 52464 |||| ||||| || ||||| | || || || ||| |||| | ||||||| | Sbjct 46012 TGGCATTCGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTTCTGGC 46071 Query 52465 TTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACG 52524 | || | | || | ||||| || |||| ||| ||||||| | || || || | Sbjct 46072 TCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAACGAGCTCATCAGTCGTGATG 46131 Query 52525 AAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGG 52584 |||| ||||||| |||||||| || || | ||| || || |||||| || || Sbjct 46132 AAGGTATGCACACAGACTTTGCTTGTCTGTTGTACTCGAAGCTGGTGACC---AAGCTGC 46188 Query 52585 ATTCGGA----CACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTT 52640 |||| | | | ||| || || || || ||| |||||| | ||||| Sbjct 46189 ---CGGAGCAGCGTGTGCACGAG-ATTATCCGTGACGCTGTGAAGATCGAACACGAGTTC 46244 Query 52641 TTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTAC 52700 | | | | |||| || || |||||| | ||||||||| || | ||||||| ||||| Sbjct 46245 GTGAGCGACTCGCTCCCAGTGGAGCTGATCGGCATGAACTCGGCGCTCATGTGCCAGTAC 46304 Query 52701 ATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCT 52760 || ||||| ||||| || || ||| || ||| || | | ||| || ||||| Sbjct 46305 ATTGAGTTCGTGGCAGACCGCCTGCTGTATTCGCTTGGTGTGTCCAAGATCTACAACGTC 46364 Query 52761 CGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAG 52820 || |||||||| | ||| ||| || || || |||||||||||||||| |||||| Sbjct 46365 AAGAACCCGTTTGACTGGATGGACATGATCTCTCTACAGGGCAAGACCAACTTCTTCGAG 46424 Query 52821 AAGCGAGTCGGCGAGTA 52837 ||||| || |||||||| Sbjct 46425 AAGCGTGTGGGCGAGTA 46441 >seq625 Length=11448 Score = 111 bits (122), Expect = 2e-19 Identities = 149/204 (73%), Gaps = 5/204 (2%) Strand=Plus/Plus Query 138416 TGTTTGACTC---CTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTT 138472 |||||| ||| ||| || ||||||||||| || || || ||||||||| || | Sbjct 2519 TGTTTGTCTCACCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCT 2578 Query 138473 TACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTT 138532 | |||| |||| |||||||| ||||| || || || || || ||||| |||||| | Sbjct 2579 TGCCGGCGAAGATCAGACGCTGCTGGTCAGGTGGAATTCCCTCCTTGTCCTGGATTTTCT 2638 Query 138533 GTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTC 138591 | || | |||| || | | |||| | || |||||| |||| ||| | || || || ||| Sbjct 2639 GCTTGACATTG-TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTC 2697 Query 138592 AGAGTTTTTACAAAAATCTGCATG 138615 || || || ||||| ||||||||| Sbjct 2698 AGGGTCTTCACAAAGATCTGCATG 2721 >seq328 Length=32478 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||| || || || |||| Sbjct 106 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCG 47 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 |||| |||||||| ||||| || || || ||||| ||||| Sbjct 46 AAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496250551735200