Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq468 131 2e-25 seq625 111 1e-19 seq13 89.7 5e-13 >seq468 Length=19833 Score = 131 bits (144), Expect = 2e-25 Identities = 172/238 (72%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | || | ||||| || | |||||||| || || || ||||| |||| Sbjct 15398 TCCGCCACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 15457 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 15458 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 15517 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| |||||||| |||||||||||| | | |||| | ||| | | ||| || Sbjct 15518 GATGCCTTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTCCAC 15577 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA---TGGCTTAT 127120 |||| || | || ||||| ||||| || || ||||| ||||||| |||||||| Sbjct 15578 GTCGAGCGTGATAGTCTTGCCAGTCAGTGTCTTCACAAAGATCTGCATCTTGGCTTAT 15635 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | |||||||| || || || ||||| |||| | Sbjct 19705 CCACCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 19646 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 19645 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 19586 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| |||||||| |||||||||||| | | |||| | ||| | | ||| || Sbjct 19585 ATGCCTTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTCCACG 19526 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || ||||| ||||| || || ||||| |||||||| Sbjct 19525 TCGAGCGTGATAGTCTTGCCAGTCAGTGTCTTCACAAAGATCTGCAT 19479 >seq625 Length=11448 Score = 111 bits (122), Expect = 1e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || || |||||| || || ||||| || || ||| ||||| Sbjct 2533 TTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 2592 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || || |||||||||||| |||||||||||||| | || Sbjct 2593 AGACGCTGCTGGTCAGGTGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 2652 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||||| ||| || |||| || | || ||||| ||||| || || ||||| Sbjct 2653 ATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 2712 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 2713 ATCTGCATG 2721 >seq13 Length=222908 Score = 89.7 bits (98), Expect = 5e-13 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||| ||| | | ||| | ||||||| || || || || ||||||||||| | Sbjct 46275 GGCATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTCGTGGCAGACCGCCTGCTGTAT 46334 Query 47472 CAGCTAAA-GTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACAT 47530 ||| || ||| ||||| ||| || | |||| || || || | ||| ||| || Sbjct 46335 TCGCTTGGTGTGTCC-AAGATCTACAACGTCAAGAACCCGTTTGACTGGATGGACATGAT 46393 Query 47531 TTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 || || |||||||||||||||| ||||||||||| || ||||| || Sbjct 46394 CTCTCTACAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTA 46441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475489447418400