Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq250 118 1e-21 >seq250 Length=44145 Score = 118 bits (130), Expect = 1e-21 Identities = 307/455 (67%), Gaps = 15/455 (3%) Strand=Plus/Minus Query 122907 GAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACG-GACGCGACATCGA 122965 |||||| || || ||| |||||||||| ||| ||||| | ||| |||| ||||| | Sbjct 42176 GAACGTCCCCAGCAGATGATCATGCGCGTGGCTCTAGGCATCCACAAGACGA-ACATC-A 42119 Query 122966 AAACGCGACC-GAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCA 123024 | || || || |||||||| | ||||| |||||||| ||||| ||||| | |||| Sbjct 42118 AGGCGGCACTTGAGACTTACGAACTCATGTCGCAAAAATTCTTCACCCACGCCACCCCCA 42059 Query 123025 CTTTGTTCGCCGCCGGCACG--AAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTT 123082 | ||||| || || || | || || || ||||||||||| || ||| | || | Sbjct 42058 CGCTGTTCAATGCTGGTACTCCACGT--CCACAATTGTCTTCGTGCTTCTTGTTGGCCAT 42001 Query 123083 GCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAA 123142 || || ||| || || || ||||| ||| || | || |||| || ||||| Sbjct 42000 GCAGGATGACTCTATTGAAGGCATTTATGACACTCTGAAACAGTGTGCGTGCATCTCCAA 41941 Query 123143 ATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGA-AGCCGCATCA 123201 | | || ||||| ||| | | ||||| || | ||| | | | ||| |||| Sbjct 41940 GTGGGCGGGAGGCATTGGCATCAGTATGCACAACATCCGAG-CTACTAACAGCTACATCC 41882 Query 123202 GAAGCACCGACGGAATCG-CCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCC 123260 | |||| |||| ||| || ||| || ||||||||||||| | || | | Sbjct 41881 GCGGCACGAACGGC-TCGTCCAACGGCATCATCCCCATGCTGCGAGTGTTTAACGATACG 41823 Query 123261 GTGCGGCACGTCGACCAGGGCGGC---AAACGCAAAGGCGCGATGGCGATCTATCTAGAA 123317 | || |||| |||||||| || |||||||| || | | ||||| ||||| ||| Sbjct 41822 GCACGATACGTGGACCAGGGTGGAGGTAAACGCAAGGGATCATTTGCGATTTATCTGGAA 41763 Query 123318 CCGTGGCACGTTGATGTGTACGATTTTTTAAATTT 123352 |||||||||| |||||||| || || || |||| Sbjct 41762 CCGTGGCACGCTGATGTGTTTGAGTTCTTGGATTT 41728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451992408423600