Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq13 172 7e-38 seq250 165 1e-35 >seq13 Length=222908 Score = 172 bits (190), Expect = 7e-38 Identities = 395/587 (67%), Gaps = 16/587 (3%) Strand=Plus/Minus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| ||| || || || ||||||||||||||||| ||||| || | || ||| | Sbjct 46448 CTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGTAGAGAGATCAT 46389 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 127344 ||||| | ||||| |||||||| ||| | || | | ||| |||| | | || Sbjct 46388 GTCCATCCAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAG 46329 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 || || || | ||| |||||||||||| |||| | | |||||||| ||||| || Sbjct 46328 CAGGCGGTCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAG 46269 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | |||||||| ||| | |||| | | || || | |||||| || || | || Sbjct 46268 CTCCACTGGGAGCGAGTCGCTCACGAACTCGTGTTCGATCTTCACAGCGTCACGGATAAT 46209 Query 127465 GGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAA--AGTCTTGAAGAGTTCCACAG-- 127520 |||| | | | | || || ||| || | || ||| |||| | |||| Sbjct 46208 CTCGTGCACACGCTGCTCC---GGCAGCTTG-GTCACCAG-CTTC--GAGTACAACAGAC 46156 Query 127521 ---CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGAC 127577 |||| ||| ||| | ||| || ||||| |||||| || || ||||||| ||||| Sbjct 46155 AAGCAAAGTCTGTGTGCATACCTTCATCACGACTGATGAGCTCGTTGGAGAAGCTCAGAC 46096 Query 127578 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGA 127637 | ||||||||||| |||||||| | |||||| || | ||||| ||||| |||||||||| Sbjct 46095 CAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGA 46036 Query 127638 TCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTT-GTATCA 127696 | ||||||||| ||||| || | |||||||| | | ||| | ||||| | || Sbjct 46035 TTCCCTCCACAGCTGCGAATGCCAGAAGACGCTCCGGGTATGAG-GACACTTTCGGGTCG 45977 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCA 127756 |||| ||| |||||| ||||| || | ||| |||| ||||| || || Sbjct 45976 CACCATCTCAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAATTGCACGC 45917 Query 127757 AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 127803 | || | | |||||| | || ||||||||| | || ||||| Sbjct 45916 AGCAGGTGGTCCTTTTCCACAGCGTCCTTGATGTACGTGTCAATGAG 45870 >seq250 Length=44145 Score = 165 bits (182), Expect = 1e-35 Identities = 471/715 (66%), Gaps = 17/715 (2%) Strand=Plus/Plus Query 116511 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATA 116570 ||| ||||| | ||||| || || ||||| ||| || |||||||| ||||| | Sbjct 41400 AATCGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCGGCGTCCTTGTACAGCATGAA 41459 Query 116571 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTG-GCA 116629 ||| |||||||| | || | | |||||||| ||| | || | || ||| Sbjct 41460 AGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCACA-----GCTGTTGAGCA 41514 Query 116630 CAG--TGGCGTT--GGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCT 116685 | || | | ||| || || || ||||||||| | || | ||| ||||| Sbjct 41515 TTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTCC 41574 Query 116686 TCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACC 116744 || ||| |||| ||| | || || || |||| | |||||||| | | ||| | || Sbjct 41575 TCTCCC-CAGCACTCGTATAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCC 41633 Query 116745 ACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCG 116804 | |||| || ||||||||||| || || || | ||| || || |||| | || || Sbjct 41634 ATTGGCCTCCACACGCTTCATGAACAGATCCGGCACCCACAGAGCATAGAACAAGTCACG 41693 Query 116805 A-CAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCG 116863 || | || || | | || || || ||||| ||||| || || | | ||| | Sbjct 41694 TGCACGGTGCAGCT-CGTTACCATGGTTCTTGCGCAAATCCAAGAACTCAAACACATCAG 41752 Query 116864 CGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTA 116920 |||||||||||||||| || | ||| | ||| |||||||| || ||| |||||| | Sbjct 41753 CGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGGTCCA 41812 Query 116921 CATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCAT 116980 | || | ||||| ||||||| || || ||||| || ||||| || | || ||| | Sbjct 41813 CGTATCGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAGCCGT 41872 Query 116981 TTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCC 117040 | || || || || || | |||| || | ||| || || ||||| || | Sbjct 41873 TCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCAATGCCTC 41932 Query 117041 CTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGT 117100 | |||||||| ||||| || |||| | ||| || | || || || || || |||| Sbjct 41933 CCGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGT 41992 Query 117101 CACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGA 117160 || ||| | || | | |||||| |||| |||||| | ||| |||||||| |||| Sbjct 41993 CATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGAGTACCAGCATTGA 42052 Query 117161 AGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTC 117215 | || || || || |||||| |||| | ||| ||||| ||||| ||||| Sbjct 42053 ACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTC 42107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613492552515600