Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq250 150 3e-31 >seq250 Length=44145 Score = 150 bits (166), Expect = 3e-31 Identities = 336/496 (68%), Gaps = 10/496 (2%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 ||||||||| |||||||| ||||||| | || | | | || ||||||||||| Sbjct 40407 CTTGTCCACGGTGAACTGGATGGCGTCAGCTTTCGGGCGTCCGCGCATGTAGTACATGCC 40466 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 ||||| || ||||||| |||| |||| | |||||| || | || ||||| | || Sbjct 40467 CGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGATGTAAGCTTGCTTTTTGTCGG 40526 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017 ||||| |||||||||||||| ||||| || || |||| |||| || ||||| || | Sbjct 40527 TTCGGCGATGTGAATGTTCAGCGACTGACTCTGACAGATG-TAGGCACCACGATCCGCAG 40585 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077 || | | ||| | ||||||| |||||||||||||||||| || || || || Sbjct 40586 ACAGGTCCAGAATCGACTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTGACGT 40645 Query 204078 GTTGAGGCA--CATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT-CATC 204133 | | || | | || ||| | ||| | ||| ||| ||| || | ||| | Sbjct 40646 GGTTCGGAATGGAGCT---CACATTCTGCACCGAACCGCCGTCATTCAAGA-TCTGGTTA 40701 Query 204134 CTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193 | | ||| |||||| |||| | |||||||| || ||||| ||| | | Sbjct 40702 CGCACCTCAGGAGCCCACACACCCAGCTCAATCAGCTCATTCATCAGGTACTTGTTCACG 40761 Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253 || ||| ||||| | ||||| | ||| || ||| |||| |||||| ||||||| Sbjct 40762 ATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTGGAGGTGAACGGTTCGATA 40821 Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGG 204313 | |||||| || |||| ||||| || || ||||| ||||| || || | || || Sbjct 40822 GACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCATCGGCGCGACCAGGAGC 40881 Query 204314 GAGTTGCGCACACCGT 204329 || ||||||| |||| Sbjct 40882 GAATTGCGCAGGCCGT 40897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795136215669600