Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq625 149 7e-31 seq468 145 9e-30 seq328 105 8e-18 seq68 105 8e-18 >seq625 Length=11448 Score = 149 bits (164), Expect = 7e-31 Identities = 149/191 (78%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||| || || ||||| |||| |||||||||||||||||||| | Sbjct 2531 CCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 2590 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| ||||||||||| | || | | |||||||||| ||| |||| ||||| | | | Sbjct 2591 TCAGACGCTGCTGGTCAGGTGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 2649 Query 46524 CCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 || | |||| || ||||| || | ||||||||| ||||||||||| || || ||| Sbjct 2650 TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 2709 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 2710 AAGATCTGCAT 2720 >seq468 Length=19833 Score = 145 bits (160), Expect = 9e-30 Identities = 175/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| || || || | | ||| | |||||| || | |||| |||||| ||||| ||||| Sbjct 15392 TTAATTTCCGCCACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTA 15451 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||| || ||||| |||| || ||||||||||||||||| |||| ||||||||||| Sbjct 15452 GTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 15511 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 | ||| | || |||||||| ||| |||| ||| | | | | || |||| | Sbjct 15512 AGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGG 15571 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||||| || | |||||| || ||||| ||||| || || |||||||| ||||| ||| Sbjct 15572 CTCCACGTCGAGCGTGATAGTCTTGCCAGTCAGTGTCTTCACAAAGATCTGCATCTTG 15629 Score = 143 bits (158), Expect = 3e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | |||| |||||| ||||| ||||||||| || ||||| |||| || Sbjct 19688 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 19629 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||||||||| |||| ||||||||||| | ||| | || |||||||| Sbjct 19628 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 19569 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||| |||| ||| | | | | || |||| | ||||| || | |||||| || || Sbjct 19568 GATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTT 19509 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||| ||||| || || |||||||| ||||| ||| Sbjct 19508 GCCAGTCAGTGTCTTCACAAAGATCTGCATCTTG 19475 >seq328 Length=32478 Score = 105 bits (116), Expect = 8e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | |||||| || | |||| |||||| ||||| ||||||||| || ||||| | Sbjct 128 ACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 69 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||||||||| |||| ||||||||||| | ||| | || ||||| Sbjct 68 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTT 9 Query 46498 GTC 46500 ||| Sbjct 8 GTC 6 >seq68 Length=108243 Score = 105 bits (116), Expect = 8e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||||| || | || |||||||| ||||| |||||||| || |||||||| | Sbjct 97525 ACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCC 97466 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 ||| || ||||||||||| ||||| |||| ||||||||||| | ||| Sbjct 97465 GTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 97418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565224904933200