Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq13 197 1e-45 seq625 122 9e-23 seq468 122 9e-23 seq328 96.9 3e-15 seq68 93.3 4e-14 >seq13 Length=222908 Score = 197 bits (218), Expect = 1e-45 Identities = 416/613 (68%), Gaps = 12/613 (2%) Strand=Plus/Minus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 ||| || ||||||||||| |||| || || || | ||||| |||||| || Sbjct 46164 ACAACAGACAAGCAAAGTCTGTGTGCATACCTTCATCACGACTGATGAGCTCGTTGGAGA 46105 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | ||| || |||||||| || || || |||||||| || |||| | || ||||| Sbjct 46104 AGCTCAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCG 46045 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 | ||||||| ||||| || || ||||| |||| || ||||| | | | || ||| Sbjct 46044 AGAAGAAGATTCCCTCCACAGCTGCGAATGCCAGAAGACGCTCCGGGTATGAGGACACTT 45985 Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGA 133126 | | || ||| | ||||||||| ||||| | | || ||||| || || || | Sbjct 45984 TCGGGTCGCACCATCTCAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAA 45925 Query 133127 TGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC---ACGTAGGTGTCGATGAGGG 133183 | || || || || | | || |||| | | | ||| ||||| ||||| Sbjct 45924 TTGCACGCAGCA---GGTGGTCCTTTTCCACAGCGTCCTTGATGTACGTGTCAATGAGCA 45868 Query 133184 TCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCG 133243 ||| |||| || ||||| | |||||| ||||| || || |||||||| ||||| || | Sbjct 45867 GCGAGTACACCTCTGAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAACGAG 45808 Query 133244 CCTCGACCACCTGCACTTCTTGAGCGAAACGCTC--GACCAGATTTTCGTTGACGATGCC 133301 |||| ||| || ||||| | || ||| | || | ||| || ||||| |||||||| Sbjct 45807 CCTCAGGCACTTGTACTTCATT-GCTAAA-GTTCATGGCCAAGTTCTCGTTCACGATGCC 45750 Query 133302 GTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAA 133361 || |||||||| || ||||||| |||||||||||||| || ||||||||||| | | Sbjct 45749 ATCACTGGCGGCAAAGAAGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAG 45690 Query 133362 GCGCTCCCAGTCGCGCGTGTCCTTGGA-CAGGTCCACCTCCTCGACGGTCCAAAACGACG 133420 | ||||||| | | | | || | || ||||| ||| || | ||||| || | Sbjct 45689 GTTTCCCCAGTC-CTTGAGGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGG 45631 Query 133421 CCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACC 133480 |||| || || |||||||| ||||| ||| | || ||||| || | ||| || | Sbjct 45630 CCTCCGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGGATGGGGAACAGCACGAAGC 45571 Query 133481 GGCGGGGGTTTTC 133493 || ||||| || Sbjct 45570 GGTTCGGGTTCTC 45558 >seq625 Length=11448 Score = 122 bits (134), Expect = 9e-23 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| |||||||| ||||||| ||| | | Sbjct 2720 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 2661 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||||| | | | | || | ||||||| ||||| ||||||||||| | ||||| Sbjct 2660 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATTCCACCTGACCAG 2601 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||||| || |||| ||||| || ||||||||| Sbjct 2600 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGTCGGACTACAAC 2541 Query 38424 ATCCAAAAGG 38433 ||||| |||| Sbjct 2540 ATCCAGAAGG 2531 >seq468 Length=19833 Score = 122 bits (134), Expect = 9e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || || ||||| || ||||| ||||||| ||| | Sbjct 15628 AAGATGCAGATCTTTGTGAAGACACTGACTGGCAAGACTATCACGCTCGACGTGGAGCCT 15569 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GA 38359 ||||| | | | | || | ||||||| ||||| || || || |||||| || Sbjct 15568 TCCGACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCAT-CCCGCCTGA 15510 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| ||||| |||||||| |||| ||||| || | |||||| Sbjct 15509 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTA 15450 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| | || || || ||||||| ||| | | ||||| Sbjct 15449 CAACATCCAGAAGGAGTCTACACTTCACCTGGTGCTTCGTCTTCGTGGCGG 15399 Score = 118 bits (130), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || || ||||| || ||||| ||||||| ||| | Sbjct 19476 AAGATGCAGATCTTTGTGAAGACACTGACTGGCAAGACTATCACGCTCGACGTGGAGCCT 19535 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GA 38359 ||||| | | | | || | ||||||| ||||| || || || |||||| || Sbjct 19536 TCCGACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCAT-CCCGCCTGA 19594 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| ||||| |||||||| |||| ||||| || | |||||| Sbjct 19595 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTA 19654 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| | || || || ||||||| || || | || ||| Sbjct 19655 CAACATCCAGAAGGAGTCTACACTTCACCTGGTGCTTCGCCTGCGTGGTGGC 19706 >seq328 Length=32478 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGA 38395 ||||| || || || |||||| ||||| ||||| || || | ||| ||||| |||||||| Sbjct 6 GACAAGGAAGGCAT-CCCGCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGA 64 Query 38396 CGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||| ||||| || | ||||||||||||||| ||||| | || || || ||||||| Sbjct 65 GGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCTACACTTCACCTGGTGCT 124 Query 38456 GCGTTTGAGAGGCGG 38470 ||| | | ||||| Sbjct 125 TCGTCTTCGTGGCGG 139 >seq68 Length=108243 Score = 93.3 bits (102), Expect = 4e-14 Identities = 100/127 (79%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 38346 GGAATTCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCG 38404 ||||| |||||| ||||| ||||| || || | ||| ||||| |||||||| |||| || Sbjct 97412 GGAAT-CCCGCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCG 97470 Query 38405 CACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGA 38463 ||| || |||||||||||||| ||||| ||| ||||| || ||||||||||| || Sbjct 97471 CACTCTGTCGGACTACAACATCCAGAAGGAGAGC-ACGCTCCACCTGGTGCTGCGTCTGC 97529 Query 38464 GAGGCGG 38470 | || || Sbjct 97530 GTGGTGG 97536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500160858374400