Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq205 118 8e-21 seq153 87.8 1e-11 seq7 86.0 5e-11 >seq205 Length=51932 Score = 118 bits (130), Expect = 8e-21 Identities = 437/675 (65%), Gaps = 20/675 (3%) Strand=Plus/Minus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 ||||||||||| || || ||||| || |||| | |||| |||| || || | ||| Sbjct 46241 ACAAGACGATTGTCGAAGTCTTCGCCGCCCAGATGCGTATCACCTGCAGTGGCCTTCACT 46182 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | ||| | ||| || |||| | || |||| || ||| ||| || || |||| || Sbjct 46181 TCGAAGATTCCTTCCTCAATACTCAGCAGAGAGACGTCAAAGGTGCCGCCGCCCAGGTCG 46122 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194 ||||| || |||| | | | | | || || || ||||| || || | |||||| Sbjct 46121 AAAATGAGCACAT---TGTGCTCCCCACGCTTCTTGTCCAGACCGTATGCGATGGCAGCA 46065 Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254 || ||||| ||||| ||||| | || || || | ||||| || || ||||| || Sbjct 46064 GCCGTTGGCTCATTGATAATGCGCAGCACGTTCAATCCAGCGATGGCACCGGCATCCTTC 46005 Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT 518314 || || || | || || ||||| ||||| || || || || | ||| |||| | ||| Sbjct 46004 GTCGCCTGGCGCTGCGAGTCGTTGAAATACGCCGGGACGGTCACAACCGCATTCTTCACT 45945 Query 518315 TCTTTACCAATATAAGCGCTT--GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 518372 | || || || | ||||| ||| | ||| || | | | ||| || |||| Sbjct 45944 TGCTTGCC--GATGAACGCTTCGGCCACCTCACGCATCTTGATCAGCACCATGGACGAAA 45887 Query 518373 TTTGTTCTGG--GGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTT 518429 | | || || |||| | ||| || || |||| || || | | | || | Sbjct 45886 TCTCCTCCGGTTGGAACGT--CTTTGACTCGCCCTTGAACTG-CACCACCACCTGAGGCT 45830 Query 518430 TATTACC---AACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTT- 518485 |||| | | || | || || || ||||| | ||| ||||| || || ||||| Sbjct 45829 TATTGTCCGGACCACGCACCACCTTGAACGGCCAATGTTTGATATCCGACTG--CACTTC 45772 Query 518486 -TGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATT 518544 ||| || | | || || | || || |||||||| | || ||| || || Sbjct 45771 CGAGTCCGAGAACTTGCGTCCGATCAGACGCTTCGCATCAAACACCGTGTTGTGTGCGTT 45712 Query 518545 AATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAAC 518604 || || |||| | ||||| |||||||| |||||| | || || || || || | || Sbjct 45711 CATGGCGACTTGGTTCTTGGCAGCATCTCCGATCAGACGCTCCGTGTCCGTGAACGCCAC 45652 Query 518605 ATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTG 518664 ||||| ||||| |||||||| || || ||||| ||||| || || || | || || Sbjct 45651 GTATGACGGAGTCGTGCGATTGCCCTGGTCATTGGCAATGATCTCCACACGGTCGTTCTG 45592 Query 518665 CCATACACCTACACA 518679 ||| ||||| || || Sbjct 45591 CCACACACCCACGCA 45577 >seq153 Length=63953 Score = 87.8 bits (96), Expect = 1e-11 Identities = 201/303 (66%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 ||||| || ||||| ||||| | || | || ||||| || | ||| | || Sbjct 57737 TCAAAGTCCTCACCGCCCAAGTGCGTGTCACCGTTGGTAGCAAGCACCTCGAACACACCG 57678 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 | |||| || || ||| || ||||| ||| || ||||| | ||||| | || || Sbjct 57677 CCGTCAATAGCCAGAAGCGTCACATCGAAGGTACCGCCACCAAGGTCAAAGACCAGCACG 57618 Query 518147 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 518206 ||| | || | | || ||||||| ||| || |||| ||||||||||| || || Sbjct 57617 TTCTTCTCGCCCTGTGCCTTCTTATCAATACCGTAAGCAATGGCAGCAGCAGTAGGCTCG 57558 Query 518207 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 518266 ||||| || | | ||| | ||||| ||||| | || ||||| || || || || | Sbjct 57557 TTAATGATACGCTGCACAGTCAGACCGGCAATGGTACCGGCATCCTTGGTAGCCTGGCGC 57498 Query 518267 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATA 518326 || | ||||| || || ||||| || |||| || || ||| ||||| ||||| Sbjct 57497 TGAGCGTCGTTGAAGTAAGCAGGCACTGTAACCACAGCGTCAAACACTTCACGGCCAATG 57438 Query 518327 TAA 518329 ||| Sbjct 57437 TAA 57435 >seq7 Length=274441 Score = 86.0 bits (94), Expect = 5e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914 |||||||| ||||||||| | || || | ||||| || ||||||||| | || || ||| Sbjct 264430 GGTAAAGAGGGTCGTATTCGTGGTAACCTAATGGGCAAGCGTGTCGATTTTTCGGCGCGT 264489 Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCC 668964 || || || || |||| || || |||||| | || ||||||||||||| Sbjct 264490 ACTGTCATCACCGCTGACCCTAACATTGCTATTGATCAAGTTGGTGTTCC 264539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780727619508460