Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1501 416 4e-111 seq250 120 4e-22 seq105 120 4e-22 seq89 96.9 4e-15 seq252 82.4 1e-10 >seq1501 Length=1609 Score = 416 bits (460), Expect = 4e-111 Identities = 847/1250 (68%), Gaps = 21/1250 (2%) Strand=Plus/Plus Query 6887 TTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTT 6946 ||||| | || | |||||| || | || || | || ||||| | ||||||| || Sbjct 372 TTCTTCGTGGGCACCGTCGTGTTACGCGCGATCAGCGTCGTCATCACACCACCCGCGGTC 431 Query 6947 TCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTC 7006 || || ||||| |||||||| ||||| |||| || | ||| || || ||| ||| || Sbjct 432 TCCAGACCAAGCGACAGAGGCGTCACATCCAGCAGCAGCAGATCCTG--CAGCTTC--TC 487 Query 7007 CCTTCACCCGTTA------AGA-TGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTC 7059 | | |||| ||| |||| || || ||||| || ||| | || || ||||| Sbjct 488 CGACGAATCGTTGCCGCTCAGAATGGCCGCCTGCACCGTGGCGCCGAACGCCACAGCCTC 547 Query 7060 ATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTG 7119 || ||||| |||| || | | || || ||||| || | ||||| | | || || Sbjct 548 GTCCGGGTTGATCGACTTGCACGGCTCCTTGCCGTTGAAGAAGTCCGACAGAAGCTGCTG 607 Query 7120 AATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATC 7179 | |||||||| || || || || ||||| | || | || | ||| | | | | || Sbjct 608 CACCTTCGGGATACGCGTGGAACCGCCGACAAGCACCACCTCGTGCACCTG-GCTCT-TC 665 Query 7180 GAT--CTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCC 7237 || ||| | ||| || || || || || || ||||| |||||||| |||| Sbjct 666 GACAGCTTCGCGTCGCGCAGCACCTTCTCCACGGGCTCCATCGTCTTACGGAAGTAGTCG 725 Query 7238 ATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTAT 7297 |||| ||||| ||||| |||||||| |||| | | ||| || | |||||| | Sbjct 726 CCGCACATGTCCTCGAAACGAGCACGGGTGATGGTCGAGTTGAAGTCGATACCGTCGAAC 785 Query 7298 AACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCA 7357 | ||| || || || ||| | || || | ||| || | ||| ||||| |||||||| Sbjct 786 AGCGAGTCGATCTCGATGTAAGCCTGGGCGGACGACGACAGCGTACGCTTGGCGCGCTCG 845 Query 7358 CACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTA 7417 || || || || | |||||| || |||||| |||| | | || || || || || Sbjct 846 CAGGCAGTCCGCAGACGACGCAGTGCACGCTGGTTCTCCGTGATGTCCTTGCGGTGCTTG 905 Query 7418 CGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAG 7477 || || ||||| |||||| | || | |||||| || |||||||||||| Sbjct 906 CGCTTGAACTCCGACACGAAGTGGTCCACCAGACGGTTATCGAAGTCCTCACCACCCAAG 965 Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537 || || || ||||| ||||| || ||||| ||||| || | || ||| | | || ||| Sbjct 966 TGCGTGTCACCCGCAGTCGCCTTCACTTCGAAGATTCCCTCCTCGATGCTCAGCAGCGAC 1025 Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTC 7597 ||||| || ||||| ||||||||||| || || || ||||| ||| || | || | Sbjct 1026 ACATCGAAGGTACCGCCACCCAGGTCGAAGATCAGCACGTTGCGCTCGCCGCCCTT---C 1082 Query 7598 TTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTC 7657 || || ||||||||||| || || || ||||| || || || || ||||| || |||| Sbjct 1083 TTGTCCAGACCGTACGCAATCGCAGCAGCCGTCGGCTCGTTGATGATACGCAGCACGTTC 1142 Query 7658 AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCC 7717 | ||| ||||| | | ||||| || || || || || ||||| ||||| ||||||||| Sbjct 1143 ATGCCGGCAATGGCACCAGCATCCTTGGTGGCCTGACGCTGCGAGTCGTTGAAGTAGGCC 1202 Query 7718 GGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTC 7777 || ||||| | ||| |||| | | || | ||| |||| ||| || || | || | Sbjct 1203 GGCACCGTGATGACGGCGTTCTTCACCTCCTTGCCGATGAACGCCTCAGCCACCTCGCGC 1262 Query 7778 ATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTA 7837 || ||| | || ||||| || || ||||| || | ||| |||| || || || Sbjct 1263 ATCTTGATCAGCACCATGGACGAGATCTCCTCCGGTTGGAACGTCTTCGACTCGCCCTTG 1322 Query 7838 AAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCT 7897 || | || ||| ||| || || | ||||| | | ||| ||| ||| | Sbjct 1323 AACTGCACCGTGATCTGGGGCTTGTCACCGGCACCCGACGACAGCTTGAACGGCCAGTGC 1382 Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957 || || || || || ||||||| ||||| | ||||| |||||||| || || Sbjct 1383 TTGATGTCCGACTGCACGATCGGGTCCGAGAACTTGCGACCGATCAGACGCTTGGCGTCG 1442 Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 || || ||||| | | |||||||| |||||||| || ||||| ||||| ||||| Sbjct 1443 AACACCGTGTTGTGCGCATTCATGGCCACCTGGTTCTTGGCGGCGTCTCCGATCAGACGC 1502 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 || | ||||| || || |||||||| |||||||| || || ||||| ||||| || Sbjct 1503 TC---CGTGTCCGTGAAGGCAACGTACGAAGGGGTCGTACGGTTACCTTGATCGTTGGCG 1559 Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGT 8127 || || || || ||||| || ||||| ||||| |||||||| || || || Sbjct 1560 ATGATCTCCACACGGTCATTCTGCCATACGCCCACGCACGAGTATGTCGT 1609 >seq250 Length=44145 Score = 120 bits (132), Expect = 4e-22 Identities = 311/471 (66%), Gaps = 5/471 (1%) Strand=Plus/Plus Query 105529 GGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGGAATC 105588 ||||| ||||| ||| || |||| || || || || |||||||||| ||| || | | Sbjct 41611 GGACAGAACAAACTCCACTTGCCATTGGCCTCCACACGCTTCATGAACAGATCCGGCACC 41670 Query 105589 CACATGGCTGAAAAGAGGTCTCGA-CACCTCGCCTCTTCATCACCTTGATTCAAACGAAT 105647 |||| || | || | ||| || ||| || || | | ||| || ||| || | Sbjct 41671 CACAGAGCATAGAACAAGTCACGTGCACGGTGCAGCT-CGTTACCATGGTTCTTGCGCAA 41729 Query 105648 TTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGACCCTTT 105707 || | || || | | ||| |||||||| ||||| | ||| | |||| || || || Sbjct 41730 ATCCAAGAACTCAAACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTT 41789 Query 105708 ACG---ACGCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAACATTGG 105764 || || || | || | || |||| ||| || |||| ||||||| | ||| || Sbjct 41790 GCGTTTACCTCCACCCTGGTCCACGTATCGTGCCGTATCGTTAAACACTCGCAGCATGGG 41849 Query 105765 AATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACGTACATC 105824 || || || | ||| | || || || || || || | ||| | || || | | Sbjct 41850 GATGATGCCGTTGGACGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTT 41909 Query 105825 GTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACTGT 105884 ||| | | ||||| || || |||||||| ||| | |||||||| ||| | || Sbjct 41910 GTGCATACTGATGCCAATGCCTCCCGCCCACTTGGAGATGCACGCACACTGTTTCAGAGT 41969 Query 105885 ATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTG 105944 || ||||| || || ||| || |||| | || | || ||| ||||| |||| ||| Sbjct 41970 GTCATAAATGCCTTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTG 42029 Query 105945 TGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAA 105995 ||| | || ||||||||||||||||| || || || || || |||| || Sbjct 42030 TGGACGTGGAGTACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAA 42080 >seq105 Length=82892 Score = 120 bits (132), Expect = 4e-22 Identities = 448/699 (64%), Gaps = 14/699 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||||| ||| || || || | || | ||||| || ||||| || Sbjct 79052 TCAAAGTCCTCACCACCCAGGTGCGTGTCACCGCCCGTGGACTTGACCTCGAAGATGCCG 78993 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || ||| | | ||| ||||| || ||||| ||||||||||| || || || ||| Sbjct 78992 TTCTCGATGGACAGGATCGACACATCGAAGGTACCGCCACCCAGGTCGAAGATCAGCACG 78933 Query 7577 TTCGTATCGT---CGTCTTTG------TTCTTATCGAGACCGTACGCGATAGCCGCCGCC 7627 || | | | |||| || ||| | || || || || || | ||| || || Sbjct 78932 TTGCAAGCCTTGCCGTCCGTGCCAGCGTTCGTGTCCAGGCCATAAGCCAGAGCGGCAGCG 78873 Query 7628 GTTGGTTCATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGT 7686 || || || || || ||||| ||| | ||| || ||||| | | || || || || Sbjct 78872 GTGGGCTCGTTGATGATACGCTTCACA-TCCAGACCGGCAATGGAACCGGCGTCCTTAGT 78814 Query 7687 CGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTT 7746 | || || ||| ||||| |||||||| || || || || || || | || || Sbjct 78813 GGACTGACGCTGCTGGTCGTTGAAGTAGGCGGGCACAGTGACCACAGCCTGGCCGATCTT 78754 Query 7747 CTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTC 7806 || || || | | || || | || ||||| | || ||||| || || ||||| Sbjct 78753 CTGGCCCAGGAAGGCCTCAGCCGTCTCCTTCATGCGGAGCAGCACCATGGACGAGATCTC 78694 Query 7807 TTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGC 7866 |||| | || |||| | || ||||| || || ||||||| | || || | Sbjct 78693 CTCAGGGGTGAAGCTTTTCTTCTCGTTCTTAAACTCGACCTCAATCAGGACCTTGTCATC 78634 Query 7867 AGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGA 7926 | | || ||| | | | | | | || ||| | | |||| | |||||| Sbjct 78633 ATCGCCCTCCTTAATCGTGAAGGGGAAGTGCTTGGCATCCTTCTTGACCATCTCGTCCGA 78574 Query 7927 AAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGT 7986 || | | || || | |||||| || || || || ||||| ||| ||| ||| | Sbjct 78573 GAAGCTGCGGCCAATGATACGCTTAGCGTCGAACACCGTGTTGGTGGCGTTACCGGCAGC 78514 Query 7987 TTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGA 8046 ||| |||| || || || ||||| ||||| || | | | | || || || |||| Sbjct 78513 CTGGATCTTGGCAGCCTCACCGATGAGACGCTCGCTGTCGT---TGAAGGCAACCCACGA 78457 Query 8047 TGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGAC 8106 || || || || || |||| ||| ||||| || || || || ||| | ||| || Sbjct 78456 CGGAGTGGTACGGTTACCTTCACTGTTGGCAATGATCTCCACCTGGCCGTCCTTCCACAC 78397 Query 8107 GCCGACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 ||| |||||||| ||||| || || | |||||||||||| Sbjct 78396 GCCCACGCACGAGTACGTCGTACCCAGATCAATACCGAT 78358 >seq89 Length=92099 Score = 96.9 bits (106), Expect = 4e-15 Identities = 137/189 (72%), Gaps = 8/189 (4%) Strand=Plus/Minus Query 184208 CTCGCGTCACGCACGTTCTTACAT-TTACCCCTAAGCGGAAAAACACCGTAATGATCACG 184266 || || |||||||| || | ||| ||||| | |||||||| |||||||| | || | Sbjct 24903 CTTGCCTCACGCACATT-TAGCATCTTACCACGCAGCGGAAATACACCGTAGTAGTCTCT 24845 Query 184267 ACCAACAACTGAAAGACCAGCAATTGCAAGTGTTTTTGCAGAATCACCTTCGGTAATAAT 184326 ||||| || | ||||||| | | || | |||||| || |||||||| || |||| || Sbjct 24844 CCCAACGACGGCAAGACCACCCACAGCTACTGTTTTAGCTGAATCACCCTCTGTAAGGAT 24785 Query 184327 AAGAGTACA---CTTACCAGAGTGTGTGGTACCGGCTTTATTGGCATCGTCGAGTTTTGG 184383 ||| || || ||| || | | || ||||| | ||||||||||| || ||||| Sbjct 24784 AAGTGTGCAGTCCTTGCCC---TTCGCAGTGCCGGCGTGGTTGGCATCGTCTAGCTTTGG 24728 Query 184384 AATACCCGT 184392 ||||||||| Sbjct 24727 AATACCCGT 24719 >seq252 Length=43026 Score = 82.4 bits (90), Expect = 1e-10 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 22724 TAGATGCGAAACGAGATTGGGGTCATGCACGCGATTACGTGAAATGTATGTGGAAAATAT 22783 ||||||| ||| || ||||||||||| ||||| || || | || |||||| ||| | Sbjct 35674 TAGATGCTCGACGCGACTGGGGTCATGCCCGCGACTATGTTGAGTGCATGTGGCGAATGT 35615 Query 22784 TACAACAAGATAAACCGGAAGATTTTGTTATTGCAACAGG 22823 | ||||| |||| ||| |||||||||||| | ||||| || Sbjct 35614 TGCAACACGATACACCAGAAGATTTTGTTGTAGCAACGGG 35575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635117636204400