Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq250 158 2e-33 seq13 125 9e-24 seq89 89.7 6e-13 >seq250 Length=44145 Score = 158 bits (174), Expect = 2e-33 Identities = 347/514 (68%), Gaps = 7/514 (1%) Strand=Plus/Minus Query 111705 TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGT 111764 |||| |||||| || || || || ||||| |||||||| ||| | || ||| |||| Sbjct 42077 TTCACCCACGCCACCCCCACGCTGTTCAATGCTGGTACTCCACGTCCACAATTGTCTTCG 42018 Query 111765 TGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAA 111824 || ||| | | || | |||| || || || | |||||||| | |||||| | | Sbjct 42017 TGCTTCTTGTTGGCCATGCAGGATGACTCTATTGAAGGCATTTATGACACTCTGAAACAG 41958 Query 111825 TGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCC 111884 ||||| ||||| |||||||| || || || || || || || | || |||| Sbjct 41957 TGTGCGTGCATCTCCAAGTGGGCGGGAGGCATTGGCATCAGTATGCACAACATCCGAGCT 41898 Query 111885 AACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGC 111944 | || || | || || || || || | || || || || ||||| || Sbjct 41897 ACTAACAGCTACATCCGCGGCACGAACGGCTCGTCCAACGGCATCATCCCCATGCTGCGA 41838 Query 111945 GTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATC 112001 || ||||||| || || || || || |||| | ||| || ||||||||||| | Sbjct 41837 GTGTTTAACGATACGGCACGATACGTGGACCAGGGTGGAGGTAAACGCAAGGGATCATTT 41778 Query 112002 GCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAAC 112061 || | ||||| || || |||||||| ||| | | |||||| | || ||||| ||| Sbjct 41777 GCGATTTATCTGGAACCGTGGCACGCTGATGTGTTTGAGTTCTTGGATTTGCGCAAGAAC 41718 Query 112062 CAAGGTGATGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCT 112120 || ||| | || | || | |||| || || | |||| ||||| ||| | || ||||| Sbjct 41717 CATGGTAACGA-GCTGCACCGTGCACGTGACTTGTTCTATGCTCTGTGGGTGCCGGATCT 41659 Query 112121 CTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACC 112180 ||||||||| | || |||| | |||||| ||| | | || ||||| || |||| || Sbjct 41658 GTTCATGAAGCGTGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAGGCTCC 41599 Query 112181 CGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGA 112213 |||||| | ||| ||| | ||| |||||||| || Sbjct 41598 CGGTCTATACGAGTGCTG-GGGAGAGGAGTTCGA 41566 >seq13 Length=222908 Score = 125 bits (138), Expect = 9e-24 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| || | ||||| || ||| ||||| ||||||||||| || ||||| ||| | Sbjct 46002 GAGCGTCTTCTGGCATTCGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCTTTTGCTCC 46061 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 || | |||||||||||||| ||||||||||| ||||| |||||||||||||||| ||| Sbjct 46062 ATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAACGAGCTCATC 46121 Query 102300 TCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||| || || | ||| ||| ||||| Sbjct 46122 AGTCGTGATGAAGGTATGCACACAGACTTTGC 46153 >seq89 Length=92099 Score = 89.7 bits (98), Expect = 6e-13 Identities = 259/386 (67%), Gaps = 26/386 (7%) Strand=Plus/Minus Query 176702 GGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCG 176761 |||||||||| ||| || | ||||| | |||||||| || || || |||| ||| Sbjct 25089 GGCCAGAAGTGGTGGATGAGATTGATCACCAGACCCTTAATATGACTGCCATCGTGATCT 25030 Query 176762 GCATCCGTCATGATCATGAGACGACCATACCG-AAGC---TCG--GAAACATCTTGATAG 176815 ||| | ||||||||| || | |||||||| |||| ||| || ||| | | | Sbjct 25029 TGATCTGCCATGATCATCAGGTGGCCATACCGCAAGCCTTTCGTGGATTCATAC-GTTTG 24971 Query 176816 TCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTT--GAA-CTCTTGGTTTGAT 176872 || ||| |||| |||||| |||||| |||| ||| ||||| |||| Sbjct 24970 GCCATAC----TTGAGT--CCAAGAA--TCTTGACCACGTTTTGAATCTCTTCGTTTTTC 24919 Query 176873 GTGAGCTGTGTGACAGAGGCATCACGAACATTCTTACA-CTTCCCACGAAGAGGGAAGAC 176931 || || | | || ||||| ||||| | || ||| ||||| || || || || Sbjct 24918 AGGATTTGGGAGTGGCTTGCCTCACGCACATT-TAGCATCTTACCACGCAGCGGAAATAC 24860 Query 176932 ACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATC 176991 |||||||| || | ||||| || | ||||| | || || | ||||| || ||||| Sbjct 24859 ACCGTAGTAGTCTCTCCCAACGACGGCAAGACCACCCACAGCTACTGTTTTAGCTGAATC 24800 Query 176992 ACCCTCTGTCACGATGAGTGTACA---CTTGCCAGATTGTGCCGTACCCGCCTTGTTCGC 177048 ||||||||| | ||| ||||| || |||||| | || || || || | ||| || Sbjct 24799 ACCCTCTGTAAGGATAAGTGTGCAGTCCTTGCC---CTTCGCAGTGCCGGCGTGGTTGGC 24743 Query 177049 ATCATCCAATTTGGGAATACCAGTAA 177074 ||| || | || |||||||| |||| Sbjct 24742 ATCGTCTAGCTTTGGAATACCCGTAA 24717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620727579775200