Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq250 152 6e-32 seq36 149 7e-31 seq89 105 8e-18 seq13 98.7 1e-15 >seq250 Length=44145 Score = 152 bits (168), Expect = 6e-32 Identities = 1052/1680 (63%), Gaps = 38/1680 (2%) Strand=Plus/Plus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || ||||| ||||| ||||| || |||||| ||||| | ||||| || | || ||| Sbjct 40456 TAGTACATGCCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGATGTAAGCTTG 40515 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGACCA 109533 |||||| | || | ||||| ||||||| |||| |||| | |||| Sbjct 40516 CTTTTTGTCGGTTCGGCGATGTGAATGTTCAGCGACTGACTCTGACAGATGTAGGCACCA 40575 Query 109534 CGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAA 109593 ||||| || | || ||| | || |||| || | || ||||| || ||||||||| Sbjct 40576 CGATCCGCAGACAGGTCCAGAATCGACTTCTGCTTGATCTCCCACACCGTCTTGTACTTC 40635 Query 109594 TTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCATG 109653 | ||||| | | |||||| | || || | || || || | |||| || Sbjct 40636 TCCTTGACGTGGTTCGGAATGGAGCTCACATTCTGCACCGAACCGCCGTCATTCAAGATC 40695 Query 109654 AGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG 109713 | | || ||| | ||| | ||| | || | || || | | || | |||| Sbjct 40696 TGGTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCAGCTCATTCATCAGGTACTTG 40755 Query 109714 TTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGT 109773 || || | | ||| || || ||||| ||| ||| ||| ||||| | ||| | ||| Sbjct 40756 TTCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTGGAGGTGAACGGT 40815 Query 109774 TCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATG 109833 |||| | |||| || || || ||||| ||||| || || || || ||||| || || | Sbjct 40816 TCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCATCGGCGCGACC 40875 Query 109834 AGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAA 109893 || || || || || || ||| | ||| ||| | || |||| || | Sbjct 40876 AGGAGCGAATTGCGCAGGCCGTTCTTGACCACCTTCTCCTTAAGCGCAGCCCAGTCCCAC 40935 Query 109894 CGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCA 109953 |||| | || | | ||||||||||| || | | ||||| ||| Sbjct 40936 AGACCGGAGGA---AGGCGTGACGTCCCACATATCGAACTGGAAGATACCCTTGCTGGCA 40992 Query 109954 GGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCT 110013 || ||||||| |||| ||||||||| ||| || ||||| || || | ||| Sbjct 40993 GGCGAACCCTGGAAAGTCTCGTACGGGCCCAATTCCGTGGCCAGTTCCATCGACGTCTCC 41052 Query 110014 AGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGG---CGAGACTCTTCA 110070 | | || | || || ||||| || |||| || |||| || | ||| | Sbjct 41053 ATAGAAGCGTAGTAGATGGTCTCGAAGATATTC---TTGTTGAGCTCACGCGCCTCCGGA 41109 Query 110071 CAGTCGAAGGGAA-GACCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACC 110129 | ||||| | || | ||| | || ||| | ||||| || ||||| ||||| | ||| Sbjct 41110 CTCTCGAACGCAAAGTCCATGAGGATGAAAG-CGTCCGCAAGGCCCTGCACACCAATACC 41168 Query 110130 AATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTC 110189 || || || || |||||| || ||||| |||||||| ||||| ||| Sbjct 41169 AACAGGACGGTGACGCATGTTGGAATTGCGAGCCTCAATAACGGGGTAGTAGTTGACGTC 41228 Query 110190 GATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATC 110249 ||||||| || || || || | ||| || |||| || || | ||| | Sbjct 41229 GATGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGACCTCATACAGCTTCTTGTAGTT 41288 Query 110250 GAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACAC 110309 |||| || | || | || | |||||||| || | ||||| | |||||||| Sbjct 41289 GAACA----CGGCG--TTCTCAACGAACTTGGGGAGCGCCACGGACGCCAAGTTGCACAC 41342 Query 110310 AGAAGTCTCGTCTTTGTCG--GTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTT- 110366 | || || | || ||||| |||| | ||| ||||||||| ||| Sbjct 41343 GGCCACTTCATCG--GGCGACGTGTACTCCATCACTTCACAGCACAAGTTG---CTCGAG 41397 Query 110367 --AATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATG 110424 ||| || | ||||| ||| || || ||| |||| || ||||| || |||||| Sbjct 41398 CGAATCGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCGGCGTCCTTGTACAGCATG 41457 Query 110425 TATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGG 110484 | || || || || |||| | | ||||| || ||| | | || | Sbjct 41458 AAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCACAGCTGTTGAGCATTG 41517 Query 110485 ACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCT 110542 | || |||| ||| | ||||| ||||||||| ||| ||| || |||| Sbjct 41518 ATTGTCTTGCGG--GCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTCCT 41575 Query 110543 GTCCGTA-CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCA 110601 ||| | ||| || | ||||| |||| || ||||||||| | ||| || ||| Sbjct 41576 CTCCCCAGCAC-TCGTATAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCCA 41634 Query 110602 CCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACG- 110660 |||| || | |||||||||||| || || | ||||| || |||| | |||||| Sbjct 41635 TTGGCCTCCACACGCTTCATGAACAGATCCGGCACCCACAGAGCATAGAACAAGTCACGT 41694 Query 110661 GCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGA 110720 ||| | || || | | ||| ||||| ||| | ||||| || || | | ||| | Sbjct 41695 GCACGGTGCAGCT-CGTTACCATGGTTCTTGCGCAAATCCAAGAACTCAAACACATCAGC 41753 Query 110721 GTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAAC 110777 |||||| ||||| ||||| | || | |||||||| || || || |||||| || Sbjct 41754 GTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGGTCCAC 41813 Query 110778 ATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATT 110837 || ||||| || | || || || | ||||| || || || || | ||| || || Sbjct 41814 GTATCGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAGCCGTT 41873 Query 110838 TGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACC 110897 || || | || | ||| | || || |||| ||| ||| || ||||| || || Sbjct 41874 CGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCAATGCCTCC 41933 Query 110898 CGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATC 110957 ||||||||| || ||||||| | | || || ||||||| || ||||| || || Sbjct 41934 CGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGTC 41993 Query 110958 TGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAA 111017 ||| |||| | | ||||| ||||||| || ||||| || || || |||||||| Sbjct 41994 ATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGAGTACCAGCATTGAA 42053 Query 111018 GAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGC 111077 || || || || || || |||| | ||| ||||| | ||| || || ||||| Sbjct 42054 CAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTCAAGTGC 42113 >seq36 Length=146880 Score = 149 bits (164), Expect = 7e-31 Identities = 289/418 (69%), Gaps = 13/418 (3%) Strand=Plus/Plus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| |||||||| ||||| || || | | || | || ||||||||| ||||||| Sbjct 80788 ATCTGCCGATCGAATCGACCAGGACGCAAAATGGCCTTGTCTAGAATATCGGCACGGTTC 80847 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| |||| | || || | || |||| | || |||||| ||||| || || Sbjct 80848 GTACCGGCGAGCACCACCACACC---CTCACTCGAGTTGAAACCATCCATCTCAACCAGC 80904 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAG--GGCATACC-ACCTGCCGAACGC 11670 |||||||| | || | ||||||||| |||||| | || | | |||| ||| Sbjct 80905 AGCTGGTTCAATGTGTTTTCACGCTCGTCGTTGCCGCCGGAAAAGTTACCTTTGCTACG- 80963 Query 11671 TTCTTAC-CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGC 11729 | | | | |||||||| || ||||| ||||| || |||||||| ||| || || || Sbjct 80964 TGCGCGCGCAACAGCGTCGATTTCATCAATGAACACAATACACGGAGCGTTCGCTCGCGC 81023 Query 11730 CTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTT 11789 || | ||| | ||||| |||||| || || ||||| ||||||||||||| ||| | Sbjct 81024 CTCCTTGAACAAGTCACGCACACGCGACGGACCCACACCGACGAACATCTCAATGAAATC 81083 Query 11790 TGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGA 11848 || | || | |||||| ||| || || | | ||||||||| | || ||| || | Sbjct 81084 TGAACCGGAGATACTGAA-GAACGGCACGCTGGCCTCACCAGCCGTTGCCTTAGCCAGCA 81142 Query 11849 GAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 | || ||||| |||||||| | ||| | || || ||||| ||||||||| || || Sbjct 81143 GTGTTTTACCTGTACCAGGCGGTCCAACAAGCAGCGCGCCCTTGGGGATCTTCGCCCC 81200 >seq89 Length=92099 Score = 105 bits (116), Expect = 8e-18 Identities = 123/165 (75%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 168429 CTTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGAC 168488 ||||||||| || |||||||| || || | ||||| || ||||||| |||||| | || Sbjct 24880 CTTACCACGCAGCGGAAATACACCGTAGTAGTCTCTCCCAACGACGGCAAGACCACCCAC 24821 Query 168489 AGCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACA---CTTTCCAGACTG 168545 ||| | ||||| ||||||||||||||||| | ||| ||||| || ||| || || Sbjct 24820 AGCTACTGTTTTAGCTGAATCACCCTCTGTAAGGATAAGTGTGCAGTCCTTGCC---CTT 24764 Query 168546 TGCCGTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGT 168590 || || || || | ||| |||||||| | || || ||||| || Sbjct 24763 CGCAGTGCCGGCGTGGTTGGCATCGTCTAGCTTTGGAATACCCGT 24719 >seq13 Length=222908 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| ||| || | |||||||| ||| ||||||||| || ||||| || ||| Sbjct 46153 GCAAAGTCTGTGTGCATACCTTCATCACGACTGATGAGCTCGTTGGAGAAGCTCAGACCA 46094 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 |||||||| || | ||||| ||||| ||||||| ||||| || || |||||||| Sbjct 46093 GGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATT 46034 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTC 119647 ||||||||| ||||| || | |||||||| Sbjct 46033 CCCTCCACAGCTGCGAATGCCAGAAGACGCTC 46002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588961938198000