Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq250 168 8e-37 seq13 123 3e-23 seq203 87.8 2e-12 seq89 82.4 9e-11 >seq250 Length=44145 Score = 168 bits (186), Expect = 8e-37 Identities = 617/954 (65%), Gaps = 19/954 (2%) Strand=Plus/Plus Query 106452 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 106511 |||| || || || | || ||||| ||||| || ||| ||||| ||||||| Sbjct 41309 ACTTGGGGAGCGCCACGGACGCCAAGTTGCACACGGCCACTTCATCGGGCGACGTGTACT 41368 Query 106512 CTAAAATTTCTGTACACAAGTTGGAACTCTT---AATCGTCCCCAAATTCTTTTGGTTAC 106568 | | | ||| ||||||||| ||| |||||| || | |||| ||||| Sbjct 41369 CCATCACTTCACAGCACAAGTTG---CTCGAGCGAATCGTGCCGAGGTTCTGCTGGTTGG 41425 Query 106569 TCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACT 106628 ||| |||| || |||||||| |||||| | ||| |||||||| |||| | | Sbjct 41426 ACTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAAGGCACGCCCGTCTCAATCTGCGCGT 41485 Query 106629 TGAGAATTGCCTTCCACACATCGGCGGC--TGGTACAATGGCGTTGGCCCGTCCCTCCGC 106686 ||||| || ||||| | || || | | ||| ||| || || || Sbjct 41486 CCAGAATAGCGAACCACAGCTGTTGAGCATTGATTGTCTTGCG--GGCGCGGCCTTCACG 41543 Query 106687 CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTG 106745 ||||||||| | || | || |||||||| ||| | || ||| | ||||| || | Sbjct 41544 CTCGTACTTCTCAAACAGCGTCTCGAACTCCTCTCCC-CAGCACTCGTATAGACCGGGAG 41602 Query 106746 CCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGT 106805 ||| || |||||||| | | ||| | ||| |||| || ||||||||||| || | Sbjct 41603 CCTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACACGCTTCATGAACAGAT 41662 Query 106806 CTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTG 106864 | || | |||||| | | || | || | | ||| | || || ||| ||| ||||| Sbjct 41663 CCGGCACCCACAGAGCATAGAACAAGTCACGTGCACGGTGCAGCT-CGTTACCATGGTTC 41721 Query 106865 AGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATA 106924 || || || | |||||| | | ||| |||||||| || || ||||| | || | Sbjct 41722 TTGCGCAAATCCAAGAACTCAAACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAAT 41781 Query 106925 GATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGA 106981 |||||||| || || ||| | || | || || || || || ||||||| || || Sbjct 41782 GATCCCTTGCGTTTACCTCCACCCTGGTCCACGTATCGTGCCGTATCGTTAAACACTCGC 41841 Query 106982 AGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGC 107040 ||||| || || || || | || || || || || || || || | ||| | || Sbjct 41842 AGCATGGGGATGATGCCGTTGGACGAGCCGTTCGTGCCGCGGATGT-AGCTGTTAGTAGC 41900 Query 107041 TCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTC 107100 || | | || || || ||||| || || |||||||| ||||| |||||||| Sbjct 41901 TCGGATGTTGTGCATACTGATGCCAATGCCTCCCGCCCACTTGGAGATGCACGCACACTG 41960 Query 107101 CGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACT 107160 | ||||| |||| || || | || ||||| |||| |||| | | |||||| Sbjct 41961 TTTCAGAGTGTCATAAATGCCTTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGA 42020 Query 107161 GGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACAT 107220 |||| || || | ||| |||||||||||||| || || || || ||||| |||| | Sbjct 42021 AGACAATTGTGGACGTGGAGTACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAA 42080 Query 107221 ACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCC 107280 ||| ||||| ||||| ||||| | | | | |||| | ||||||||| Sbjct 42081 TTTTTGCGACATGAGTTCGTAAGTCTCAAGTGCCGCCTTGATGTTCGTCTTGTGGATGCC 42140 Query 107281 GATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTG 107340 | ||||| ||||| | ||| | ||||| ||||| | |||| | || || Sbjct 42141 TAGAGCCACGCGCATGATCATCTGCTGGGGACGTTCCACCACTTTGCCGTGGACACGGAA 42200 Query 107341 AAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 ||||||| | |||| || || || | ||||| ||| | | ||| |||| || Sbjct 42201 GAGATAGCCCCTCTCCAGTGTCTTAAAGCCAAAATAATCGTATTCAAAGTCTCG 42254 >seq13 Length=222908 Score = 123 bits (136), Expect = 3e-23 Identities = 331/500 (66%), Gaps = 12/500 (2%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 46441 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGTAGAGAGATCATGTCCATC 46382 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 117105 ||||||| || ||||| |||| | || | ||| |||| | || || || Sbjct 46381 CAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAGCAGGCGG 46322 Query 117106 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACAT 117165 || | ||| |||||||||||| | |||| | | |||||||| ||||| || | | Sbjct 46321 TCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCACT 46262 Query 117166 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGG 117225 ||||| | ||| | |||| | | || |||| || || || | || |||| Sbjct 46261 GGGAGCGAGTCGCTCACGAACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTCGTGC 46202 Query 117226 ATA----GTTTCGGTAG-TGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACT 117280 | | | | ||| || | |||| || || || | | | | ||||| | Sbjct 46201 ACACGCTGCTCCGGCAGCTTGGTC----AC-CAGCTTCGAGTACAACAGACAAGCAAAGT 46147 Query 117281 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGA 117340 | ||| | ||| ||||| || || || || || ||||||| || || ||||||| Sbjct 46146 CTGTGTGCATACCTTCATCACGACTGATGAGCTCGTTGGAGAAGCTCAGACCAGGCATGA 46087 Query 117341 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 117400 |||| |||||||| | ||| | || | ||| || || || ||||||||||| ||||||| Sbjct 46086 GACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCTCCA 46027 Query 117401 CACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTT-GTGTCAAACCATTTC 117459 || || || || | ||| ||||| | | | ||| || ||||| | ||| ||||| || Sbjct 46026 CAGCTGCGAATGCCAGAAGACGCTCCGGGTATGAG-GACACTTTCGGGTCGCACCATCTC 45968 Query 117460 ATTGCCCATTTCGCCTTCTT 117479 | ||||| |||||||||| Sbjct 45967 AGCGCCCAACTCGCCTTCTT 45948 >seq203 Length=52029 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 206 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 265 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 266 CCGGTAGGAGCTT 278 >seq89 Length=92099 Score = 82.4 bits (90), Expect = 9e-11 Identities = 119/167 (71%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 169361 CTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGAC 169420 ||| ||||| || ||||| || || |||| || | |||||||||| ||||| | || Sbjct 24880 CTTACCACGCAGCGGAAATACACCGTAGTAGTCTCTCCCAACGACGGCAAGACCACCCAC 24821 Query 169421 CGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACA---CTTTCCAGATTG 169477 || | ||||| |||||||||||||| || | || || || || ||| || | Sbjct 24820 AGCTACTGTTTTAGCTGAATCACCCTCTGTAAGGATAAGTGTGCAGTCCTTGCC---CTT 24764 Query 169478 CGCCGTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAATACCAGTAA 169524 ||| || || || | ||| || ||||| | ||| |||||||| |||| Sbjct 24763 CGCAGTGCCGGCGTGGTTGGCATCGTCTAGCTTTGGAATACCCGTAA 24717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589966714208400