Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq80 185 7e-42 >seq80 Length=102449 Score = 185 bits (204), Expect = 7e-42 Identities = 461/682 (68%), Gaps = 31/682 (5%) Strand=Plus/Plus Query 29791 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 29850 ||||| ||| ||||| || ||||| | |||||| ||||| || || || | ||||| Sbjct 13360 AGCTGCTTCTGAAGCGGCTCTACGTGGTTCAGGTATACGTGTGCATCGCCAATAATGTGG 13419 Query 29851 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA-CGTGAGGAGAGAGTA 29909 | ||| || || |||| | || | || || |||| || || ||| || || | || Sbjct 13420 ATAAATTCGCCAGGTTTCAAACCAGCCACTTGGGCCA-CAAGTCGCGTCAGTAGCGCATA 13478 Query 29910 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 29969 ||||||||||| || || || ||||| |||||||| |||| | |||||| | ||| || Sbjct 13479 ACTGGCGATGTTGAACGGCACGCCGAGGCCCATGTCAGCCGAACGCTGGTACATCTGGCA 13538 Query 29970 CGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 ||| | ||| || || ||||||||||||||| | |||||||||| || || ||||| Sbjct 13539 CGACAACTCGCCATCCGCCACGTAAAACTGACAAAACATGTGGCACGGCGGCAGCGCCAT 13598 Query 30030 GAGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGG 30084 | || || || || ||||| || ||| | || || | ||| || | Sbjct 13599 ----CTCATTGAGATCCGCCGGATTCCACGCAGACAGCACAATCCGACGGTCGGTCGAGT 13654 Query 30085 TTGTTC-CTG-ATGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAG 30141 | || | | | || || ||| | || || |||||||| ||| || | |||| Sbjct 13655 TCGTGCGCAGTTTGTGGATCAC----CTCAGCAAGTTGATCCACTCCCTGTCCAGTGTAG 13710 Query 30142 TCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGT 30201 ||||| ||| |||||||||| ||||| || || | ||||||||| || ||||| ||| Sbjct 13711 TCTGCATGCATATCCGTGTACTTGGCTCCAAAGTGACGCCACTGGAATCCATACACTGGT 13770 Query 30202 CCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCG 30261 ||||| ||||| ||||||| || | || | |||||||| | |||| || || Sbjct 13771 CCCAGATCTCCTACTTCCCTCGACTGCAGTCCACGACTGTCCAAATACTCTCGCGATCCA 13830 Query 30262 TTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTG 30321 ||| | |||||||| | | |||||| | | | || | || ||| || Sbjct 13831 TTGCCATCCCAGATATGAATGTCCTTCTGCTGCAACGTATGGGCACTCGTATCCCCACTA 13890 Query 30322 ACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG-GAG 30380 | ||||||||||| |||||| | || | |||| || || |||| ||||| || | Sbjct 13891 ATGAACCACAGCAATTCCTCCGCCACACCTCTCCAGAACACTTTCTTAGTCGTCAGCAAT 13950 Query 30381 GGGAA---ACTGTCCCTTGAGGCCGTA---CATGGCCTGAGAACCAAACACGGACAAGAC 30434 ||||| | | |||| | || | | | ||| ||||| |||||||| ||||| | Sbjct 13951 GGGAACACATTATCCC-TCAGACTGAAGCGCAT---CTGAGCCCCAAACACCGACAA-AG 14005 Query 30435 TCCC-GTGCCCGTCCTGTCTCC 30455 |||| || || |||| |||||| Sbjct 14006 TCCCTGTTCCTGTCCGGTCTCC 14027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408608088148430