Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq13 203 6e-47 seq250 199 7e-46 >seq13 Length=222908 Score = 203 bits (224), Expect = 6e-47 Identities = 553/841 (66%), Gaps = 17/841 (2%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| |||||||| ||||| |||| | ||||| | ||||| Sbjct 46442 GTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGTAGAGAGATCATGTCCAT 46383 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || || ||||| ||| || | | | || || | | | ||||||| | Sbjct 46382 CCAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAGCAGGCG 46323 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || ||| |||| ||||| | ||||||| | ||||||||| || || ||| Sbjct 46322 GTCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCAC 46263 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 || | | | | | ||||| | || |||| ||| || || | | ||||| | Sbjct 46262 TGGGAGCGAGTCGCTCACGAACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTCGTG 46203 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 || || ||| | | ||| | ||| ||| | || | || || |||||||| Sbjct 46202 CACACGCTGCTCCGGCAGCTTGGTCACCAG---CTTCGAGTACAACAGACAAGCAAAGTC 46146 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 |||||| ||||| || || ||||||||| |||||||||||| ||||||||||||| Sbjct 46145 TGTGTGCATACCTTCATCACGACTGATGAGCTCGTTGGAGAAGCTCAGACCAGGCATGAG 46086 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAG-AGCCAGAGAAGAAGATGCCCTCCA 48260 || | || ||||||||||| || | || |||| |||| ||||||||||| ||||||| Sbjct 46085 ACCACGCTTCTTGAGCCAGAAGATGGA-GCAAAAGGAGCCCGAGAAGAAGATTCCCTCCA 46027 Query 48261 CTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG---CGTTCTTGTCTGAGATCCAGG 48317 | || ||||| || || | ||| | | || | | ||| ||| | ||| Sbjct 46026 CAGCTGCGAATGCCAGAAGACGCTCCGGGTATGAGGACACTTTCGGGTC---GCACCATC 45970 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCT 48377 |||||||| |||||||| | | || || || ||||| || || || | || | Sbjct 45969 TCAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAATTGCACGCAGCAGGT 45910 Query 48378 TCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAG 48434 | || | |||||| | || || | |||||||| | ||||| ||| | Sbjct 45909 GGTCCTTTTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGC---GAGTACACCTCTG 45853 Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494 |||| | ||||| || || |||||||| ||||||||| | |||||| ||| || | Sbjct 45852 AGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGCACTTGTA 45793 Query 48495 CTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554 |||| || || || || ||||| || || || ||||| || ||||||| Sbjct 45792 CTTCATTGCTAAAGTTCATGGCCAAGTTCTCGTTCACGATGCCATCACTGGCGGCAAAGA 45733 Query 48555 AGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTA 48614 |||| | ||| || || | ||| || |||||||||| ||||| |||| ||| | Sbjct 45732 AGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGGTTTCCCCAGTCCTTGA 45673 Query 48615 CGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACA 48674 ||| | ||| ||||| |||||| ||||||||||| || || || ||||||| Sbjct 45672 GGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGGCCTCCGCCTTCTTGTACA 45613 Query 48675 T 48675 | Sbjct 45612 T 45612 >seq250 Length=44145 Score = 199 bits (220), Expect = 7e-46 Identities = 900/1403 (64%), Gaps = 40/1403 (3%) Strand=Plus/Plus Query 212948 GTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCT 213007 ||| | ||| || ||| | || ||||| |||||| || || || |||||||| || Sbjct 40794 GTACATGTTGGAGGTGAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGA 40853 Query 213008 GGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCG 213067 || || ||||| || || |||||||| || | || |||| || | | | Sbjct 40854 CGCCGTCGGCATCGGCGCGACCAGGAGCGAATTGCGCAGGCCGTTCTTGACCACCTTCTC 40913 Query 213068 CCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTC 213127 | |||| | ||||||||||| ||||| || | | | |||| |||||| || Sbjct 40914 CTTAAGCGCAGCCCAGTCCCA-----CAGACCGGAGGAAGGCGTG-ACGTCCCACATATC 40967 Query 213128 AAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTC 213187 ||||| ||||| || ||||| | || |||||| ||| ||| ||||| || Sbjct 40968 GAACTGGAAGATACCCTTGCTGGCAGGCGAACCCTGGAAAGTCTCGTACGGGCCCAATTC 41027 Query 213188 CTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCT 213247 | ||||||| || |||| || || | ||||||||||||||| || || || | | | Sbjct 41028 CGTGGCCAGTTCCATCGACGTCTCCATAGAAGCGTAGTAGATGGTCTCGAAGATATTCTT 41087 Query 213248 GTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGC 213307 |||||||| ||||| || | ||| | | |||| | ||| | || || Sbjct 41088 GTTGAGCTCACGCGCCTCCGGACTCTCGAACGCAAAGTCCATGAGGATGAAAGCGTCCGC 41147 Query 213308 CAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCT 213366 || ||||| || || || || | || | ||| | || ||| || ||| |||| ||| Sbjct 41148 AAGGCCCTGCACACCAATACCAACAGGACGGTGACGCATGTTGGAATTGCGAGC-CTCAA 41206 Query 213367 CCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGA 213426 | |||||| ||||| |||||||| |||||| |||||||| ||| ||| ||| || Sbjct 41207 TAACGGGGTAGTAGTTGACGTCGATGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGA 41266 Query 213427 CATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGG 213486 | | ||| | || || ||||||||| ||| || || |||| || || | Sbjct 41267 CCTCATACAGCTTCTTGTAGTTGAACACGG------CGTTCTCAACGAACTTGGGGAGCG 41320 Query 213487 CGATGCTGGCCAGGTTGCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATGATCTCG 213545 | | | |||| |||||| |||||||| || | | | | | ||||||||||| | || Sbjct 41321 CCACGGACGCCAAGTTGCACACGGCCACTTCATCGGGCGAC-GTGTACTCCATCACTTCA 41379 Query 213546 GTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA 213605 ||||| |||||| | || || ||||| |||||||| ||||| ||||| |||||| Sbjct 41380 CAGCACAAGTTGCTCGAGCGAATCGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCG 41439 Query 213606 GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTC 213665 | |||||||| |||||| | || || ||||| | ||| | |||| || | | Sbjct 41440 GCGTCCTTGTACAGCATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAAC 41499 Query 213666 CAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGT-AGCCTCGTACTGTTC 213724 || || | || |||| | || | | ||| | | | |||||||| || Sbjct 41500 CACAGCTGTTGAGCATTGA----TTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTC 41555 Query 213725 GTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGA--CAGGATGCGGGA 213782 | ||| | ||| || | |||||| | || || || ||| | | | |||| Sbjct 41556 AAACAGCGTCTCGAACTCCTCTCCCCAGCACTCGTATAGACCGGGAGCCTCGTT--GGGA 41613 Query 213783 CACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCAC 213842 || | | ||||| | || | | || | || ||||||||| ||||| |||||| Sbjct 41614 CAGAACAAACTCCACTTGCCATTGGCCTCCACACGCTTCATGAACAGATCCGGCACCCAC 41673 Query 213843 AGCGCGGTGAACAGGTC-CCTGGTC--CTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGA 213899 || || ||||| ||| | || | | ||||| ||| ||| ||||||| | Sbjct 41674 AGAGCATAGAACAAGTCACGTGCACGGTGCAGCTCGT---TACCATGGTTCTTGCGCAAA 41730 Query 213900 TCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCC-GG 213958 || | || ||||| | || ||||||||||| |||| || || ||||| | ||| | Sbjct 41731 TCCAAGAACTCAAACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTG 41790 Query 213959 CCTCT--TGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGT 214016 | | | || ||||||||||| | ||| ||| || | ||||| | ||| Sbjct 41791 CGTTTACCTCCACCCTGGTCCACGTATCGTGCCGTATCGTTAAACACTCGCAGCATGGGG 41850 Query 214017 ACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTG 214076 | | ||||||||| ||||| || || || || | | || | | |||| Sbjct 41851 ATGATGCCGTTGGACGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTG 41910 Query 214077 CTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTC 214136 ||| || || ||||| || || |||||||||| || || | ||| ||| Sbjct 41911 TGCATACTGATGCCAATGCCTCCCGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTG 41970 Query 214137 TCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTG- 214195 || ||||| | || |||||| | | || ||||||||| || | || Sbjct 41971 TCATAAATGCCTTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGT 42030 Query 214196 GGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGA 214255 || | |||| | |||| ||||| ||||||||| |||| ||| | | || || | || Sbjct 42031 GGACGTGGA-GTACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGA 42089 Query 214256 GAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATG-TCGTGCTTGTGGATCTGTAGAGCGC 214314 | ||| ||| ||||| || | | |||| |||| ||||||||| |||||| | Sbjct 42090 CATGAGTTCGTAAGTCTCAAGTGCCGCCTTGATGTTCGT-CTTGTGGATGCCTAGAGC-C 42147 Query 214315 AC-CTCATCAGCATGTGCTGGGG 214336 || | ||| | ||| |||||||| Sbjct 42148 ACGCGCATGATCATCTGCTGGGG 42170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931510559654400