Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq13 165 2e-35 seq250 132 9e-26 >seq13 Length=222908 Score = 165 bits (182), Expect = 2e-35 Identities = 490/753 (65%), Gaps = 19/753 (3%) Strand=Plus/Plus Query 25574 ACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGA 25633 |||||| || || ||||| |||| ||||| |||||||| ||| |||||| || |||| Sbjct 45700 ACGAGCGTCACTTCATCAAGCACGTCTTGGCCTTCTTTGCCGCCAGTGATGGCATCGTGA 45759 Query 25634 ACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTC 25692 ||||||| || | || || | || ||||| || || | || |||| || ||| Sbjct 45760 ACGAGAACTTGGCCATGAACTTTAGCAATGAAGTACAAGTGCCTG-AGGCTCGTTGCTTC 45818 Query 25693 TACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG 25752 ||||| |||||||| ||||| || || | ||||| |||||||| | ||| || || Sbjct 45819 TACGGCTTCCAGATTGCCATTGAGAACATCCACTCAGAGGTGTACTC---GCTGCTCATT 45875 Query 25753 ---ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATA 25809 |||||||| | |||| | || | || | ||| | |||| || ||| ||| Sbjct 45876 GACACGTACATCAAGGACGCTGTGGAAAAGGACCACCTGCTGCGTGCAATTGAGACCATC 45935 Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTAC 25868 || | | | | ||||||| | ||||| ||| ||| | || | | || | | | Sbjct 45936 CCGTGTGTGACCAAGAAGGCGAGTTGGGCGCTGAGATGGTGCGACC-CGAAAGTGTCCTC 45994 Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 | ||||| || | || || || ||||||||||| ||||| ||| || || || Sbjct 45995 ATACCCGGAGCGTCTTCTGGCATTCGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCTT 46054 Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988 | ||||||||||||||||| || || |||||| || ||| ||| |||||||| Sbjct 46055 TTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAACGA 46114 Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCA 26048 ||||||||| | || || ||| | |||| ||| ||||| || ||| | ||| || | Sbjct 46115 GCTCATCAGTCGTGATGAAGGTATGCACACAGACTTTGCTTGTCTGTTGTACTCG---AA 46171 Query 26049 CTTGCTCCACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGA 26107 || | || || || | || || || || || ||| || |||||| ||| Sbjct 46172 GCTGGT-GACCAAGCTGCCGGAGCAGCGTGTGCACGAGATTATCCGTGACGCTGTGAAGA 46230 Query 26108 TCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGAC 26167 |||| | ||||| | ||||||||| | Sbjct 46231 TCGAACACGAGTTCGTGAGCGACTCGCTCCCAGTGGAGCTGATCGGCATGAACTCGGCGC 46290 Query 26168 TCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCA 26227 ||||| |||| |||||||||| ||||| |||| ||||||| ||| || | ||| Sbjct 46291 TCATGTGCCAGTACATTGAGTTCGTGGCAGACCGCCTGCTGTATTCGCTTGGTGTGTCCA 46350 Query 26228 GACTCTACAGTACGCC--TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAA 26285 |||||| ||| | |||||||| |||| ||||| | || || | | || || Sbjct 46351 AGATCTACA--ACGTCAAGAACCCGTTTGACTGGATGGACATGATCTCTCTACAGGGCAA 46408 Query 26286 GACCAACTTCTTTGAAAAGAGGGTCGGCGACTA 26318 |||||||||||| || ||| | || ||||| || Sbjct 46409 GACCAACTTCTTCGAGAAGCGTGTGGGCGAGTA 46441 >seq250 Length=44145 Score = 132 bits (146), Expect = 9e-26 Identities = 695/1093 (64%), Gaps = 65/1093 (6%) Strand=Plus/Plus Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGA-----GA 221478 ||||| |||||||||||| ||||| |||||||||| ||| | ||||| ||| || Sbjct 41058 AGCGTAGTAGATGGTCTCGAAGATATTCTTGTTGAG-CTCACGCGCCTCCGGACTCTCGA 41116 Query 221479 A-GTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537 | | ||| ||| | | |||||| |||| || || ||||| || || ||||| | Sbjct 41117 ACGCAAAGTCCATGAGGA-----TGAAAG-CGTCCGCAAGGCCCTGCACACCAATACCAA 41170 Query 221538 TGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGA 221597 || | ||| | | |||||||| | || || ||||| || |||||||||||| Sbjct 41171 CAGGACGGTGACGCATGTTGGAATTGCGAGCCTCAATAACGGGGTAGTAGTTGACGTCGA 41230 Query 221598 TCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGA 221657 | | ||||| ||||| | ||||| || || || ||||| |||||||| || |||| Sbjct 41231 TGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGACCTCATACAGCTTCTTGTAGTTGA 41290 Query 221658 ACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCA 221717 ||| || ||| || || || | || || ||| |||| Sbjct 41291 ACA---------CGGCGT---------TCTCAACGAACTTGGGGAGCGCCACGGACGCCA 41332 Query 221718 GGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGC 221777 ||| ||||||||||| || || || |||| || | || || | ||||| Sbjct 41333 AGTTGCACACGGCCACTTCATCGGGCGACGTGTACTCCATCACTTCACAGCACAAGTTGC 41392 Query 221778 TGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGA 221837 | | || || || |||| | || || |||||||| ||||| ||||||||||| | Sbjct 41393 TCGAGCGAATCGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCGGCGTCCTTGTACA 41452 Query 221838 GCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG 221897 |||| || || |||| ||||| | ||| || ||||||| | ||| || | | | Sbjct 41453 GCATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCACAGCTGTTGAG 41512 Query 221898 CGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCA 221951 | | | ||| | | || ||| |||| ||| ||| || ||| Sbjct 41513 CATTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAAC---------AGCG 41563 Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGAC 222011 | || |||| || || | ||||| || || ||| | | |||||| | || || Sbjct 41564 TCTCGAACTCCTCTCCCCAGCACTCGTATAGACCGGGAGCCTCGTTGGGACAGAACAAAC 41623 Query 222012 TCCAGTGCTTG---TTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068 |||| |||| ||| | | || | || |||||| || ||||| | |||||| || | Sbjct 41624 TCCA---CTTGCCATTGGCCTCCACACGCTTCATGAACAGATCCGGCACCCACAGAGCAT 41680 Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128 || | || | | || ||| ||| || | ||| || | || |||||| |||| Sbjct 41681 AGAACAAGTCACGTGCACGGTGCAGCTCGTTACCATGGTTCTTGCGCAAATCCAAGAACT 41740 Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188 |||| | |||||||||||||| |||||||| | || | | || || || | Sbjct 41741 CAAACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTC 41800 Query 222189 CACCCTGATCCAC-CATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCG 222247 ||||||| ||||| ||| | || | |||| || | || || | || | | ||| Sbjct 41801 CACCCTGGTCCACGTATCGT-GCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCG 41859 Query 222248 TTGGATCGA-CCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG-GCAG 222305 ||||| ||| ||||| ||||| ||||| || | ||| || | || ||| Sbjct 41860 TTGGA-CGAGCCGTTCGTGCCGCGGATGTA-GC-TGTTAGTAGCTC-GGATGTTGTGCAT 41915 Query 222306 AC--ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCAT 222363 || ||||| || || || || || ||||| || || || |||||||| Sbjct 41916 ACTGATGCCAATGCCTCCCGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATA 41975 Query 222364 GATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTG-AGATT 222422 ||||| || |||||||| |||| | | || || || || || |||| || || Sbjct 41976 AATGCCTTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACG 42035 Query 222423 TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCA 222482 ||| | | || || || ||||||||||| ||||||| || ||| | ||||| | Sbjct 42036 TGGAGTACCA-GCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGA 42094 Query 222483 GATCGTACGTCTC 222495 | ||||| ||||| Sbjct 42095 GTTCGTAAGTCTC 42107 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 221050 CAAAAGCTCGGTACGCATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCAT 221109 ||| | || | |||||| ||| | ||| | |||| ||| |||| | || | || Sbjct 40689 CAAGATCTGGTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCAGCTCATTCATCAG 40748 Query 221110 GTGCTTGTTCACCACTTGGAAA-TCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAG 221168 || ||||||||| | | | ||| ||||||| ||||| | | | ||||| ||| || | Sbjct 40749 GTACTTGTTCACGA-TGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTGGAGG 40807 Query 221169 TGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGG 221228 ||||||||||||| |||||| || || |||||||| ||||| || || ||||| | Sbjct 40808 TGAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCATCG 40867 Query 221229 GTGCCACCAGCAGACTGTTGCGCAGTCCG 221257 | || ||||| || |||||||| ||| Sbjct 40868 GCGCGACCAGGAGCGAATTGCGCAGGCCG 40896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928822623830400