Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq250 156 5e-33 seq13 123 3e-23 >seq250 Length=44145 Score = 156 bits (172), Expect = 5e-33 Identities = 455/692 (66%), Gaps = 9/692 (1%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 75187 || |||| ||| | | ||| ||||| | || || || |||| | ||||||| || Sbjct 42254 CGAGACTTTGAATACGATTATTTTGGCTTTAAGACACTGGAGAGGGGCTATCTCTTCCGT 42195 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 || | |||| | ||||| || ||| | ||| ||||||| || || | |||||| Sbjct 42194 GTCCACGGCAAAGTGGTGGAACGTCCCCAGCAGATGATCATGCGCGTGGCTCTAGGCATC 42135 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 ||| | |||| | | | | ||||| ||||| ||||| ||| | ||| Sbjct 42134 CACAAGACGAACATCAAGGCGGCACTTGAGACTTACGAACTCATGTCGCAAAAATTCTTC 42075 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGC 75367 | ||||| || || || || |||||||||||||| ||| | || || |||| ||| Sbjct 42074 ACCCACGCCACCCCCACGCTGTTCAATGCTGGTACTCCACGTCCACAATTGTCTTCGTGC 42015 Query 75368 TTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGT 75427 ||| | | |||| |||| ||||| || | || || |||| ||||| | ||||| Sbjct 42014 TTCTTGTTGGCCATGCAGGATGACTCTATTGAAGGCATTTATGACACTCTGAAACAGTGT 41955 Query 75428 GCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAAT 75487 ||| ||||| |||||||| || || ||||| || || || | | |||| | | Sbjct 41954 GCGTGCATCTCCAAGTGGGCGGGAGGCATTGGCATCAGTATGCACAACATCCGAGCTACT 41895 Query 75488 AA-ATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGT 75546 || | || || || || || || || || | || || || || ||||| || || Sbjct 41894 AACAGCT-ACATCCGCGGCACGAACGGCTCGTCCAACGGCATCATCCCCATGCTGCGAGT 41836 Query 75547 ATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGC 75603 ||||||| || || || || || | || | || || |||||||| || | || Sbjct 41835 GTTTAACGATACGGCACGATACGTGGACCAGGGTGGAGGTAAACGCAAGGGATCATTTGC 41776 Query 75604 GGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCA 75663 | | || ||||||| ||||| || ||| | | |||||| | || || || ||||| Sbjct 41775 GATTTATCTGGAACCGTGGCACGCTGATGTGTTTGAGTTCTTGGATTTGCGCAAGAACCA 41716 Query 75664 AGGTGACGAAGAGGCTCGGTGTA-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTT 75722 ||| ||| || || | ||| | | || | || | | |||||| | || || || | Sbjct 41715 TGGTAACG-AGCTGCACCGTGCACGTGACTTGTTCTATGCTCTGTGGGTGCCGGATCTGT 41657 Query 75723 TCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAG 75782 |||||||||| || |||| ||| | ||| | | |||||||| || |||| || | Sbjct 41656 TCATGAAGCGTGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAGGCTCCCG 41597 Query 75783 GTCTCTCCGA-CGCGGTGGGTGAGGAGTTTGA 75813 |||| | ||| || | ||| |||||||| || Sbjct 41596 GTCTATACGAGTGCTG-GGGAGAGGAGTTCGA 41566 >seq13 Length=222908 Score = 123 bits (136), Expect = 3e-23 Identities = 331/500 (66%), Gaps = 12/500 (2%) Strand=Plus/Plus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGACAC-AAAGTCTCGCTCCTTCGCCGAGCG 65081 |||||||||| ||||| ||| ||||| ||| | ||||| || ||| | | | ||||| Sbjct 45948 AAGAAGGCGAGTTGGGCGCTGAGATGGTGCGACCCGAAAGTGTC-CTCATACCCGGAGCG 46006 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 ||| | || || || ||||||||| ||||||||||| || || || ||| | || | Sbjct 46007 TCTTCTGGCATTCGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTT 46066 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||| | |||||||| ||||||||||| || || ||||||| || || || || || Sbjct 46067 CTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAACGAGCTCATCAGTCG 46126 Query 65202 AGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAATAGACC 65261 ||||| ||| | ||| || ||||| | | | | || || || |||| Sbjct 46127 TGATGAAGGTATGCACACAGACTTTGCTTGTCTGTTGTACTCGAAGCTG-GT----GACC 46181 Query 65262 CA-CTACCGAAAC----TATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGG 65316 | || ||| | | | | |||| || | || || || |||| || | | | Sbjct 46182 AAGCTGCCGGAGCAGCGTGTGCACGAGATTATCCGTGACGCTGTGAAGATCGAACACGAG 46241 Query 65317 TTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAG 65376 ||| | ||| | |||||| | || ||||| |||||||| | | |||| | || Sbjct 46242 TTCGTGAGCGACTCGCTCCCAGTGGAGCTGATCGGCATGAACTCGGCGCTCATGTGCCAG 46301 Query 65377 TACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCATTTGGAAC 65436 |||||||||| ||| | || || || || | |||| ||| | || | ||| Sbjct 46302 TACATTGAGTTCGTGGCAGACCGCCTGCTGTATTCGCTTGGTGTGTCCAAGATCTACAAC 46361 Query 65437 GCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTT 65496 | ||||| || ||||||| ||||| | || || | || |||||||||||||| Sbjct 46362 GTCAAGAACCCGTTTGACTGGATGGACATGATCTCTCTACAGGGCAAGACCAACTTCTTC 46421 Query 65497 GAGAAGCGAGTTGGGGACTA 65516 |||||||| || || || || Sbjct 46422 GAGAAGCGTGTGGGCGAGTA 46441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596555356900800