Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq468 125 6e-24 seq250 114 1e-20 seq625 91.5 1e-13 >seq468 Length=19833 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || ||||| |||||||| || || | | Sbjct 19478 GATGCAGATCTTTGTGAAGACACTGACTGGCAAGACTATCACGCTCGACGTGGAGCCTTC 19537 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||| | | || | || || || || ||||||||||| ||||| || || || || || Sbjct 19538 CGACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCA 19597 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| ||||| || ||||||||||| | | || || || || Sbjct 19598 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAA 19657 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| || ||||| ||| ||||| | || |||| || ||| Sbjct 19658 CATCCAGAAGGAGTCTACACTTCACCTGGTGCTTCGCCTGCGTGGTGGC 19706 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || ||||| |||||||| || || | | Sbjct 15626 GATGCAGATCTTTGTGAAGACACTGACTGGCAAGACTATCACGCTCGACGTGGAGCCTTC 15567 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||| | | || | || || || || ||||||||||| ||||| || || || || || Sbjct 15566 CGACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCA 15507 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| ||||| || ||||||||||| | | || || || || Sbjct 15506 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAA 15447 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||| || ||||| || ||||| ||| ||||| Sbjct 15446 CATCCAGAAGGAGTCTACACTTCACCTGGTG 15416 >seq250 Length=44145 Score = 114 bits (126), Expect = 1e-20 Identities = 395/609 (65%), Gaps = 9/609 (1%) Strand=Plus/Plus Query 139389 GCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATC 139448 ||| || |||| || ||| |||||||||||||||| | ||||| ||| | | ||| || Sbjct 41631 GCCATTGGCCTCCACACGCTTCATGAACAGATCCGGCACCCACAGAGCATAGAACAAGTC 41690 Query 139449 GCGCGCCTTCTT-ATCTTCCGAACCCATGTTACGTTT-CATGTTAAGGAAATCAAAAACG 139506 || || | | || || ||||| | | | || | | ||| ||||| || Sbjct 41691 ACGTGCACGGTGCAGCT--CGTTACCATGGTTCTTGCGCAAATCCAAGAACTCAAACACA 41748 Query 139507 TCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTT---GCCACCTTGA 139563 ||||||||||| ||||||||||| || || | || || || ||||| ||||| || Sbjct 41749 TCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGG 41808 Query 139564 TCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTT 139623 || |||| |||| | | || || || || |||| ||| || | ||| | | | Sbjct 41809 TCCACGTATCGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAG 41868 Query 139624 CCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATT 139683 ||||| |||| |||||| ||||| |||||||| || || | | ||||||| || Sbjct 41869 CCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCAATG 41928 Query 139684 CCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATG 139743 || || | | ||||| || | | || | | || || || || ||| || Sbjct 41929 CCTCCCGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATA 41988 Query 139744 CTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCT 139803 ||| |||||||| | | || ||||| || || | ||| || || || || || Sbjct 41989 GAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGAGTACCAGCA 42048 Query 139804 GCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCG 139863 ||||| || || | ||||| ||||| | || || |||||| | |||||| || || Sbjct 42049 TTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTCA 42108 Query 139864 A-TGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTG 139922 | || ||| | || | | | |||||| || | || || ||||| | ||| || || Sbjct 42109 AGTGCCGC-CTTGATGTTCGTCTTGTGGATGCCTAGAGCCACGCGCATGATCATCTGCTG 42167 Query 139923 GATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGGTCTTGTA 139982 | ||||| |||| ||| | || ||||| || |||| || ||||| | Sbjct 42168 GGGACGTTCCACCACTTTGCCGTGGACACGGAAGAGATAGCCCCTCTCCAGTGTCTTAAA 42227 Query 139983 GCCAAAGTA 139991 |||||| || Sbjct 42228 GCCAAAATA 42236 >seq625 Length=11448 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || |||||||| || || | | Sbjct 2720 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 2661 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| || ||||| || || || || Sbjct 2660 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATTCCACCTGACCAG 2601 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || ||| ||||||| ||||| || ||||| ||||| Sbjct 2600 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGA 2566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449886858694800