Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq13 194 3e-43 seq43 152 8e-31 seq37 143 4e-28 seq250 91.5 2e-12 >seq13 Length=222908 Score = 194 bits (214), Expect = 3e-43 Identities = 242/328 (74%), Gaps = 8/328 (2%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||| ||||||| ||||||||||| ||| |||||| |||||||||||||||| || Sbjct 46456 ACGCCTGCCTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGTAGA 46397 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCAC---CCG 794009 ||||||| |||||||| |||||||| | | | || || ||| | || || Sbjct 46396 GAGATCATGTCCATCCAGTCAAACGGGTT---CTTGACGTTGTAGATCTTGGACACACCA 46340 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 ||||| ||||||||||| || ||||| |||||||||||||||||||| || | |||| Sbjct 46339 AGCGAATACAGCAGGCGGTCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTC 46280 Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 |||||||| ||| |||| || ||||| ||||| || ||||| | ||||||| || || Sbjct 46279 ATGCCGATCAGCTCCACTGGGAGCGAGTCGCTCACGAACTCGTGTTCGATCTTCACAGCG 46220 Query 794130 TCGATGATGATCTGCCTGGGCACG-TCGGACGACGGCTTGTCGACGAGCATCGTGTAGAG 794188 || ||| |||| | || |||| | || | ||||| || ||| ||| ||| | Sbjct 46219 TCACGGATAATCT-CGTGCACACGCTGCTCCGGCAGCTTGGTCACCAGCTTCGAGTACAA 46161 Query 794189 CAGGCAGGCAAAGTCGCAATGCAGACCT 794216 ||| || |||||||| |||| |||| Sbjct 46160 CAGACAAGCAAAGTCTGTGTGCATACCT 46133 Score = 183 bits (202), Expect = 5e-40 Identities = 241/331 (73%), Gaps = 11/331 (3%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 |||||| || |||||||| | |||||| |||| || || |||||||| || ||||| Sbjct 46136 ACCTTCATCACGACTGATGAGCTCGTTGGAGAAGCTCAGACCAGGCATGAGACCACGCTT 46077 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| || || ||||||||| ||||| ||||| || || || || Sbjct 46076 CTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCTCCACAGCTGCGAA 46017 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTT---GTTGATCCACTTCATCGC 794516 | | || ||||| | | | | || |||| || | ||| ||| ||| Sbjct 46016 TGCCAGAAGACGCTCCGGGTATGAGGACA------CTTTCGGGTCGCACCATCTCAGCGC 45963 Query 794517 CCA-CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCT 794575 ||| ||| ||||| || |||| | || | || || || || || | |||||||||| Sbjct 45962 CCAACTC-GCCTTCTTGGTCACACACGGGATGGTCTCAATTGCACGCAGCAGGTGGTCCT 45904 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 | || || | |||||||| ||| ||||| ||||| |||||||| |||||||||||||| Sbjct 45903 TTTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCGAGTACACCTCTGAGTGGATGT 45844 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || ||||| ||||||||||| || ||||| Sbjct 45843 TCTCAATGGCAATCTGGAAGCCGTAGAAGCA 45813 Score = 141 bits (156), Expect = 1e-27 Identities = 187/256 (73%), Gaps = 10/256 (4%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || ||||| || || || | ||| ||||| |||||| ||||||||| Sbjct 45808 GCCTCAGGCACTTGTACTTCATTGCTAAAGTTCATGGCCAAGTTCTCGTTCACGATGCCA 45749 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || |||||||| || ||||| | |||||||||||| ||||||||||||| ||| |||| Sbjct 45748 TCACTGGCGGCAAAGAAGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGG 45689 Query 796270 GAGACCCAGTGGACCGT---GTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 |||||| || | |||| | | ||| | ||| || || ||||| ||| | Sbjct 45688 TTTCCCCAGT---CCTTGAGGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTG 45632 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATCCGT--TGGTAGCGGATGGGGAACAGAACAA 796384 ||||| ||||| |||||||||| ||| | ||| || | ||||||||||||| || | Sbjct 45631 GCCTCCGCCTTCTTGTACATCTGCCACA--CGTCGTGCTCCTGGATGGGGAACAGCACGA 45574 Query 796385 AGCGATTGGGGTTCTC 796400 |||| || |||||||| Sbjct 45573 AGCGGTTCGGGTTCTC 45558 >seq43 Length=134600 Score = 152 bits (168), Expect = 8e-31 Identities = 189/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || ||||| || ||||| || ||||||||| |||| || || || ||| Sbjct 27825 TGAACTTGGTCACAGCCTTCGTGCCCTCCGACACGGCGTGCTTGGCAAGCTCACCAGGCA 27766 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || ||||| || ||||||||||||||| || | ||| |||||| | Sbjct 27765 GCATGAGACGCACAGCCGTCTGGATCTCGCGGCTGGACAGCGTCGACTTCTTGTTGTAAC 27706 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| ||||||||| | ||||||| |||| |||||||||| |||||||||| Sbjct 27705 GCGACAGCTTGCCGGCCTCCGATGCGATGCGCTCGAAGATGTCGTTGATGAACGAGTTCA 27646 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||| ||| |||||||||||||| |||||||||| Sbjct 27645 TGATCGACATGCCACGCTTGCTGATACCCGTCTCGGGGTGCACCTGACGCAGCACCTTGT 27586 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | ||| |||||||| Sbjct 27585 AGATGTAGGTGGAGTACGA 27567 >seq37 Length=145167 Score = 143 bits (158), Expect = 4e-28 Identities = 187/259 (72%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || ||||| || || || || ||||||||| ||||||| || || | | Sbjct 103612 TGAACTTGGTCACAGCCTTCGTGCCTTCAGACACGGCGTGCTTGGCCAGCTCACCCGGGA 103553 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || ||||| || ||||||||||| ||| || | ||| |||||| | Sbjct 103552 GCATGAGACGCACAGCAGTCTGGATCTCACGGCTGGACAGCGTCGACTTCTTGTTGTAAC 103493 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| ||||||||| | ||||||| |||| |||||||||| |||||||||| Sbjct 103492 GCGACAGCTTGCCGGCCTCCGACGCGATGCGCTCGAAGATGTCGTTGATGAACGAGTTCA 103433 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||| ||| |||||||||||||| |||||||||| Sbjct 103432 TGATCGACATACCGCGCTTGCTGATACCCGTCTCGGGGTGCACCTGGCGCAGCACCTTGT 103373 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | ||| |||||||| Sbjct 103372 AGATGTAGGTAGAGTACGA 103354 >seq250 Length=44145 Score = 91.5 bits (100), Expect = 2e-12 Identities = 350/538 (65%), Gaps = 20/538 (4%) Strand=Plus/Plus Query 2069253 GTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCGGT 2069312 ||| ||||| ||||||||||||| || || || ||||| ||||||||||| || Sbjct 40410 GTCCACGGTGAACTGGATGGCGTCAGCTTTCGGGCGTCCGCGCATGTAGTACATGCCCGT 40469 Query 2069313 CTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCATT---CGG 2069369 |||||| || ||||||||| ||||||||| || | || | || ||| Sbjct 40470 CTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGATGTAAG---CTTGCTTTTTGTCGG 40526 Query 2069370 GACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGC 2069429 |||| || | ||| |||||||| ||||| || |||| | || || || | Sbjct 40527 TTCGGCGATGTGAATGTTCAGCGACTGACTCTGACAGATGTAGGCACCACGATCCGCAGA 40586 Query 2069430 CATGTCGATGGTC-ACG-CGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTGAGA 2069487 || ||| | || || | | | || ||||||||| |||||| || |||||| Sbjct 40587 CAGGTCCAGAATCGACTTCTGCTTGAT--CTCCCACACCGTCTTGTACTTCTCCTTGACG 40644 Query 2069488 TGCGGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCC-CTGCGCTGCGATGAGGCG 2069546 || ||| | | | ||| | | |||||||| || | | | | | || | Sbjct 40645 TGGTTCGGAA-----TGGAGCTCACATTC-TGCACCGAACCGCCGTCATTCAA-GATCTG 40697 Query 2069547 GTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATGCGC-TCGACCAGGTGGCGGT 2069605 || || | || || | ||||| || || | |||| || | | | ||||| || Sbjct 40698 GTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCA-GCTCATTCATCAGGTACTTGT 40756 Query 2069606 TGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCT 2069665 | || | |||||| || |||| ||||||||||| |||| |||||| |||| | Sbjct 40757 TCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTGGAGGTGAACGGTT 40816 Query 2069666 CGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGA 2069725 || | |||| | || || |||||||| | ||| | ||||| ||||| |||| || | Sbjct 40817 CGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCATCGGCGCGACCA 40876 Query 2069726 GCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCA 2069783 | ||||| ||||||||||||| || |||| | || || || |||||||||| Sbjct 40877 GGAGCGAATTGCGCAGGCCGTTCTTGACCACCTTCTCCTTAAGCGCAGCCCAGTCCCA 40934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916043224588490