Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq1853 123 6e-24 >seq1853 Length=1064 Score = 123 bits (136), Expect = 6e-24 Identities = 215/311 (69%), Gaps = 4/311 (1%) Strand=Plus/Minus Query 18769 GAAAAAACTTTCTGCGACTGCGTTGTCATGACAGTTACCGCGACGGCTCATACTGCCCTC 18828 ||| || || || || ||||| ||||| || ||||| || || |||||||| || | Sbjct 1049 GAAGAAGCTCTCAGCCACTGCATTGTCGTGGCAGTTGCCTCGCCGGCTCATGCTCGGAAC 990 Query 18829 CAGCCCGTGTGATTTCAGGAACGACTGCCACTCATAGCTTGTGTACTGACTGCCTTGATC 18888 | |||||| ||||| | ||| |||| | || ||| |||| |||||||| || Sbjct 989 TATGCCGTGTTGCTTCAGTAGCGATAGCCAGTTGCTACTAGTGAACTGGCTGCCTTGGTC 930 Query 18889 AGAATGAACCAGCA--CCTGCTTTTGAGGATTACGTCGCCACACGGCCATCAGAAGTGCA 18946 || |||| | || || || ||| || || ||| | || | ||||| Sbjct 929 GGAGTGAATGATCAAGCCCGCAGC--AGGCTTCCGCTTCCATATCGCTGATACGAGTGCC 872 Query 18947 TTCAGGACAATATCCTTTGTCATCCGGGGCTGCATTGACCAGCCAATAACTTTGCGCGAG 19006 | || |||| |||| | |||||| ||| |||| ||| |||||||| || | || ||| Sbjct 871 TGCAACACAAGATCCGTGGTCATCTGGGACTGCGTTGCCCAGCCAACCACCTGCCGTGAG 812 Query 19007 AACAGGTCAACAACCACAGCCAGATACAGCCAGCCTTCGTGAGTCCGGATGTAGGTGATG 19066 | ||||| || | ||||| ||| ||||||||||||| | || ||||||||||| ||| Sbjct 811 TAGAGGTCGACGATCACAGTCAGGAACAGCCAGCCTTCATACGTGCGGATGTAGGTAATG 752 Query 19067 TCCGTTACCCA 19077 || || ||||| Sbjct 751 TCGGTGACCCA 741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127101117122400