Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq250 289 3e-73 seq468 154 1e-32 seq625 129 6e-25 seq13 122 8e-23 seq328 102 8e-17 >seq250 Length=44145 Score = 289 bits (320), Expect = 3e-73 Identities = 1193/1849 (65%), Gaps = 62/1849 (3%) Strand=Plus/Plus Query 147953 GCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGA 148012 ||||| |||||||||||||||||||| ||| | ||| ||||| ||||| ||| | Sbjct 40449 GCGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGATG- 40507 Query 148013 CATGAGCGTG---TACGTCGGGTGCGGC-ACAAACAGATTAAACGACTGGCTCTGGTCAA 148068 | ||| || | ||||| | |||| | | || | |||||| ||||| | Sbjct 40508 --TAAGCTTGCTTTTTGTCGGTT-CGGCGATGTGAATGTTCAGCGACTGACTCTGACAGA 40564 Query 148069 TGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT-CTTCATCTCCCAGGCC 148127 || | || ||||| || || | || || | || ||| || | ||| |||||||| || Sbjct 40565 TGTAGGCACCACGATCCGCAGACAGGTCCA-GAATCGACTTCTGCTTGATCTCCCACACC 40623 Query 148128 GTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGG 148187 ||||||||| | ||||| || | |||||| | | ||||||||| |||| | Sbjct 40624 GTCTTGTACTTCTCCTTGACGTGGTTCGGAATGGAGCTCACATTCTGCACCGAACCGCCG 40683 Query 148188 TGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCG 148247 | || ||||| || |||| || | | | ||||| ||||| |||| Sbjct 40684 TCATTCAAGATCTGGTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCAGCTCATTC 40743 Query 148248 ATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTG 148307 ||||| |||| ||||| | |||||| || || |||||||| || |||| |||| Sbjct 40744 ATCAGGTACTTGTTCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTG 40803 Query 148308 CTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGC 148367 || |||||||| | |||||||| || || | ||||| || || | ||||| ||| Sbjct 40804 GAGGTGAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGC 40863 Query 148368 ATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCC 148427 || ||| ||||| ||||| ||||||| ||| || | || ||| || || Sbjct 40864 ATCGGCGCGACCAGGAGCGAATTGCGCAGGCCGTTCTTGACCACCTTCTCCTTAAGCGCA 40923 Query 148428 GCCCAGTCCCAGAG--CGGCG-ACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCG 148484 ||||||||||| || ||| | | || || |||| |||||| ||| |||| | || || Sbjct 40924 GCCCAGTCCCACAGACCGGAGGAAGGCGTGACGTCCCACATATCGAACTGGAAGATACCC 40983 Query 148485 CGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAG 148544 ||| || || |||| | | | |||||| || ||| |||||||| || Sbjct 40984 TTGCTGGCAGGCGAACCCTGGAAAGTCTCGTACGGGCCCAATTCCGTGGCCAGTTC-CAT 41042 Query 148545 CT-CGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCA---GCGC 148600 | || ||| | | ||||||| || |||||| || | | |||||||| |||| Sbjct 41043 CGACGTCTCCATAGAAGCGTAGTAGATGGTCTCGAAGATATTCTTGTTGAGCTCACGCGC 41102 Query 148601 CGCCG-ACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTA 148659 | ||| |||| ||| ||| | || | | || ||||| ||||||||||| | Sbjct 41103 CTCCGGACTC----TCGAACGCAAAGTCCATGAGGATGAAAGCGTCCGCAAGGCCCTGCA 41158 Query 148660 CGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAG 148718 | || | |||| || ||||| |||||||| ||| || ||| | | || ||| Sbjct 41159 CACCAATACCAACAGGACGGTGACGCATGTTGGAATTGCGAGC-CTCAATAACGGGGTAG 41217 Query 148719 TGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTT-----TGTAATTCTGC 148773 | |||| |||||||| ||||| || ||||| | |||||| | || | || Sbjct 41218 TAGTTGACGTCGATGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGACCTCATACAGC 41277 Query 148774 --GCAGCAATTCAAAATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGC 148831 | | || || | || || ||| |||| | | || | || | || || Sbjct 41278 TTCTTGTAGTTGAACA-CGGCGTTCTCA---ACGA-ACTTGGG--GAGCGCCACGGACGC 41330 Query 148832 TAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATT 148891 | |||||||||||| ||||| || | ||||||| | | || ||||| || Sbjct 41331 CAAGTTGCACACGGCCACTTCATCGGGCGACGTGTACTCCATCACTTCACAGCACAAGTT 41390 Query 148892 GCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTA 148951 ||| | ||| ||| | ||||| || ||| ||||| |||| ||||||||||| Sbjct 41391 GCTCGAGCGAATCGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCGGCGTCCTTGTA 41450 Query 148952 CAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTC 149008 ||||||| | || |||| || || | ||||| |||| || ||||| ||| | Sbjct 41451 CAGCATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACC---ACAGCTG 41507 Query 149009 CTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTC 149068 || || | | || | ||| || || ||||||| | ||||| ||| Sbjct 41508 TTGAGCATTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTC 41567 Query 149069 GAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCA 149128 |||| |||| || |||| |||| |||||||| || || || || | | ||| Sbjct 41568 GAACTCCTCTCCCCAGCACTCGTATAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCA 41627 Query 149129 CACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAG 149188 | ||| | || | ||| |||||||| |||||||| |||||||| || || || | | Sbjct 41628 CTTGCCATTGGCCTCCACACGCTTCATGAACAGATCCGGCACCCACAGAGCATAGAACAA 41687 Query 149189 GT--CGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGT-TGAGCACGCTGAA 149245 || || || | ||||| ||| || ||| ||||| | || || | || Sbjct 41688 GTCACGTGCACGGTGCAG--CTCGTTACCATGGTTCTTGCGCAAATCCAAGAACTC-AAA 41744 Query 149246 TATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTT---GCCGCC 149302 | || ||||||||||| || | || | ||| | | |||||||| || || || Sbjct 41745 CACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACC 41804 Query 149303 CTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGC 149362 |||||| |||| || || | | |||||||||||| | ||| || ||||| ||| Sbjct 41805 CTGGTCCACGTATCGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGA 41864 Query 149363 AGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCC 149422 | |||||| || || ||| ||| ||||| | ||||||| ||| ||| Sbjct 41865 CGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCC 41924 Query 149423 GATGCCGCCGCCGTACTTTGAGATGGCCGCGCA--GTCGCCGAGCGTCGAGTAGATGCCC 149480 ||||| || | |||| |||||| ||| || || | ||| ||| || ||||| Sbjct 41925 AATGCCTCCCGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTC--ATAAATGCCT 41982 Query 149481 TCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTG 149540 || || ||| || ||||| || || |||||||| ||| ||| ||| | || Sbjct 41983 TCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGAGTA 42042 Query 149541 CCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTAC 149600 || || ||||| |||||| ||||||| || || |||| || ||| | ||||| Sbjct 42043 CCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAA 42102 Query 149601 GACTCGAGCACGCGGTCCATGTCATCGCC--ATGGATGCCTATGGCGACGCGCATCAGCA 149658 | ||| || | | |||| ||| | |||||||||| || |||||||| | || Sbjct 42103 GTCTCAAGTGCCGCCTTGATGT--TCGTCTTGTGGATGCCTAGAGCCACGCGCATGATCA 42160 Query 149659 TATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTG 149718 | ||||| || || ||| |||||||| | || | ||||| | || |||| Sbjct 42161 TCTGCTGGGGACGTTCCACCACTTTGCCGTGGACACGGAAGAGATAGCCCCTCTCCAGTG 42220 Query 149719 TCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGC 149767 |||| ||||||| || | ||| |||||||| ||| | ||| |||||| Sbjct 42221 TCTTAAAGCCAAAATAATCGTATTCAAAGTCTCGGTCATGGATAATGGC 42269 >seq468 Length=19833 Score = 154 bits (170), Expect = 1e-32 Identities = 161/208 (77%), Gaps = 5/208 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || |||| ||| |||||| ||||||||||| Sbjct 15429 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC-GTCCTCCAGCTGCTTGCC 15487 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || ||||||||||||||||| ||| || ||||| Sbjct 15488 GGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTT 15547 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || ||||| ||||||||||||| |||| || ||||| ||||| || Sbjct 15548 CACATTGTCGATCGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTTGCCAGTCAGTGT 15607 Query 133643 TTTTACGAAAATCTGCA---TGGCTTAT 133667 || || || ||||||| |||||||| Sbjct 15608 CTTCACAAAGATCTGCATCTTGGCTTAT 15635 Score = 152 bits (168), Expect = 5e-32 Identities = 154/198 (78%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || |||| ||| |||||| ||||||||||| Sbjct 19675 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC-GTCCTCCAGCTGCTTGCC 19617 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || ||||||||||||||||| ||| || ||||| Sbjct 19616 GGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTT 19557 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || ||||| ||||||||||||| |||| || ||||| ||||| || Sbjct 19556 CACATTGTCGATCGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTTGCCAGTCAGTGT 19497 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 19496 CTTCACAAAGATCTGCAT 19479 Score = 102 bits (112), Expect = 8e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 133536 CGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACC 133595 ||||||||||| || ||||||||||||||||| ||| || ||||| | | || | | Sbjct 19831 CGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATC 19772 Query 133596 GTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATC 133655 | ||||| ||||||||||||| |||| || ||||| ||||| || || || || ||| Sbjct 19771 GAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTTGCCAGTCAGTGTCTTCACAAAGATC 19712 Query 133656 TGCATG 133661 |||||| Sbjct 19711 TGCATG 19706 >seq625 Length=11448 Score = 129 bits (142), Expect = 6e-25 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 133473 TTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAAATG 133532 ||||| || ||||| || || |||| |||||||||||||||||| ||| | || Sbjct 2533 TTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 2592 Query 133533 AGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCA 133592 || ||||||||||| || || || || |||||||| ||| || ||||||| | ||| Sbjct 2593 AGACGCTGCTGGTCAGGTGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 2652 Query 133593 ACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAA 133652 | |||| | ||||||||||||| |||| ||| ||||| ||||| || || || || Sbjct 2653 ATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 2712 Query 133653 ATCTGCATG 133661 ||||||||| Sbjct 2713 ATCTGCATG 2721 >seq13 Length=222908 Score = 122 bits (134), Expect = 8e-23 Identities = 287/424 (68%), Gaps = 11/424 (3%) Strand=Plus/Minus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||||||||| || || ||||| || ||||| || ||||||| | || || ||| ||| Sbjct 46442 GTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGTAGAGAGATCATGTCCAT 46383 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTG--TACGAGCAGT 120471 | || |||||||| | |||| || || | || |||| | ||| ||||| Sbjct 46382 CCAGTCAAACGGGTTCTTGACGTTGTAG-ATCTTGGACACACCAAGCGAATAC-AGCAGG 46325 Query 120472 CGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCC 120531 ||||| || || ||||||||||||| ||||||| | || ||||||||| | || | || Sbjct 46324 CGGTCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCC 46265 Query 120532 ACCGGCAACGCCGACG-TGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGC 120590 || || | || | || | | ||||| | || || | ||| || || || || | Sbjct 46264 ACTGGGAGCG-AGTCGCTCACGAACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTC 46206 Query 120591 GAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCG-GTAGTACAGGCACGCAA 120649 | ||| | || | |||| |||| || || |||| ||| |||| || |||| Sbjct 46205 GTGCACACGCTGCTCCGGCAGCTTG-GTCACCAGC---TTCGAGTACAACAGACAAGCAA 46150 Query 120650 AGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCA 120709 |||| ||||||| || || || || || ||||||||| || |||| || |||| Sbjct 46149 AGTCTGTGTGCATACCTTCATCACGACTGATGAGCTCGTTGGAGAAGCTCAGACCAGGCA 46090 Query 120710 TGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCT 120769 ||| || | |||||| |||| |||| | |||| |||||| ||||| | |||| Sbjct 46089 TGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCT 46030 Query 120770 CCAC 120773 |||| Sbjct 46029 CCAC 46026 >seq328 Length=32478 Score = 102 bits (112), Expect = 8e-17 Identities = 87/105 (83%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || |||| ||| |||||| ||||||||||| Sbjct 109 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC-GTCCTCCAGCTGCTTGCC 51 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 ||| | || || ||||||||||| || ||||||||||||||||| Sbjct 50 GGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483409258328400