Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq80 230 3e-55 >seq80 Length=102449 Score = 230 bits (254), Expect = 3e-55 Identities = 329/455 (72%), Gaps = 14/455 (3%) Strand=Plus/Plus Query 146882 TGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGT 146941 ||||||| ||||| ||| | | || ||||| | | || ||||| |||||||| |||| Sbjct 13334 TGGGGAATGGTCGCGGGGTGCGTGCTAGCTGCTTCTGAAGCGGCTCTACGTGGTTCAGGT 13393 Query 146942 AGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGG 147001 | ||||| || || || | |||| | ||| || || || || | || | ||| |||| Sbjct 13394 ATACGTGTGCATCGCCAATAATGTGGATAAATTCGCCAGGTTTCAAACCAGCCACTTGGG 13453 Query 147002 CCACCATGTAG-GTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATG 147060 |||| | || | || || |||| || ||||| |||||||| || || || ||||||||| Sbjct 13454 CCACAA-GTCGCGTCAGTAGCGCATAACTGGCGATGTTGAACGGCACGCCGAGGCCCATG 13512 Query 147061 TCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCAC 147120 || |||| | |||||||| ||||||||| | ||| || || |||||||||||||| || Sbjct 13513 TCAGCCGAACGCTGGTACATCTGGCACGACAACTCGCCATCCGCCACGTAAAACTGACAA 13572 Query 147121 AGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACC 147180 | ||||||||||||||||||||||| | || ||||| || ||||| || || | | Sbjct 13573 AACATGTGGCACGGCGGCAGCGCCATCTCATTGAGATCCGCCGGATTCCACGCAGACAGC 13632 Query 147181 ACCAGCCGCCTG-CTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGC----T 147235 || | ||| | | | || | |||| | | | | ||| ||||||||| | Sbjct 13633 ACAATCCGACGGTCGGTC-GAGTTCGTGCGCAGTTTGTGGAT----CACCTCAGCAAGTT 13687 Query 147236 GGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCACGTACCTGGCCCCAAAGTGC 147294 | ||||| ||||| || ||||| || | ||| ||| |||| |||| |||||||| Sbjct 13688 GATCCACTCCCTGTCCAGTGTAGTCTG-CATGCATATCCGTGTACTTGGCTCCAAAGTGA 13746 Query 147295 CTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCC 147329 | ||||||||| || |||||||| ||||| || || Sbjct 13747 CGCCACTGGAATCCATACACTGGTCCCAGATCTCC 13781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583474069224000