Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq13 298 8e-75 seq43 132 7e-25 seq37 120 4e-21 seq653 116 5e-20 seq140 100 4e-15 >seq13 Length=222908 Score = 298 bits (330), Expect = 8e-75 Identities = 424/587 (72%), Gaps = 16/587 (3%) Strand=Plus/Plus Query 1455731 GATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTAC 1455790 || |||||||||||||| || ||||||||||||| | || | ||| | |||||| Sbjct 45558 GAGAACCCGAACCGCTTCGTGCTGTTCCCCATCCAGGAGCACGACGTGTGGCAGATGTAC 45617 Query 1455791 CAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGAC---AC 1455847 || ||||| |||||| ||| ||||| || || ||| | ||| | | |||| | Sbjct 45618 -AAGAAGGCGGAGGCCAGCTTCTGGACTGCGGAAGAGCTGGACTTGGTACACGACCTCAA 45676 Query 1455848 GGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTT 1455907 || |||||| || | ||| ||||||| || ||||||||||||||| | ||||| Sbjct 45677 GG---ACTGGGGAAACCTCACAGACAACGAGCGTCACTTCATCAAGCACGTCTTGGCCTT 45733 Query 1455908 TTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGG 1455967 ||| |||||||| |||||||||||| ||||||| ||||| ||||| || || | Sbjct 45734 CTTT-GCCGCCAGTGATGGCATCGTGAACGAGAACTTGGCCATGAACTTTAGCAATGAAG 45792 Query 1455968 TCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACT 1456027 | ||| |||| ||||| |||| || ||||| |||||||| ||||| || |||||||||| Sbjct 45793 TACAAGTGCCTGAGGCTCGTTGCTTCTACGGCTTCCAGATTGCCATTGAGAACATCCACT 45852 Query 1456028 CTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACC 1456087 | || |||||||| || || ||||| ||| |||||||| | || || |||||||||| Sbjct 45853 CAGAGGTGTACTCGCTGCTCATTGACACGTACATCAAGGACGCTGTGGAAAAGGACCACC 45912 Query 1456088 TCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGT 1456147 | | || || || || || | |||| |||| || ||||| |||||| ||| | Sbjct 45913 TGCTGCGTGCAATTGAGACCATCCCGTGTGTGACCAAGAAGGCGAGTTGGGCGCTGAGAT 45972 Query 1456148 GGATCAACAAGGA--GGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTC 1456204 || | || | | | |||| | || | ||||| || | | || || || || Sbjct 45973 GGTGCGACCCGAAAGTGTCCTC-ATAC---CCGGAGCGTCTTCTGGCATTCGCAGCTGTG 46028 Query 1456205 GAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTC 1456264 ||||| ||||| ||||||||| || ||| ||||||| |||||||||||||| || ||| Sbjct 46029 GAGGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTC 46088 Query 1456265 ATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 ||||| |||| | |||| |||||| | |||||||| || |||| Sbjct 46089 ATGCCTGGTC-TGAGCTTCTCCAACGAGCTCATCAGTCGTGATGAAG 46134 Score = 181 bits (200), Expect = 2e-39 Identities = 244/330 (74%), Gaps = 10/330 (3%) Strand=Plus/Plus Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCG-A 1456505 |||| ||||| |||||||| |||||| | ||| ||| ||| || | ||||| | || | Sbjct 46133 AGGTATGCACACAGACTTTGCTTGTCTGTTGTACTCGAAGCTGGTGACCAAGCTGCCGGA 46192 Query 1456506 CCGACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCG 1456565 | |||| || | |||| ||| || || || ||||||| | ||||| || |||| Sbjct 46193 GCAGCGTGTGCACG-AGATTATCCGTGACGCTGTGAAGATCGAACACGAGTTCGTGAGCG 46251 Query 1456566 AGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAA 1456625 | ||||| || |||| ||| |||||||||||| | ||||||||||||||||||||| | Sbjct 46252 ACTCGCTCCCAGTGGAGCTGATCGGCATGAAC-TCGGCGCTCATGTGCCAGTACATTG-A 46309 Query 1456626 TTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGC-- 1456683 || || || ||||||||||| |||| || || | ||| |||| ||| | Sbjct 46310 GTTCGTGGCAGACCGCCTGCTGTATTCGCTTGG-TGTGTCCAAGATCTAC--AACGTCAA 46366 Query 1456684 CAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCG 1456743 |||||||| |||||||| ||||||| || |||||||||||||||| |||||| Sbjct 46367 GAACCCGTTTGACTGGATGGACATGATCTCTCTACAGGGCAAGACCAACTTCTTCGAGAA 46426 Query 1456744 CCGCGT-GGCGAGTACGCCAAGGCCGGCGT 1456772 || || ||||||||| ||||||| ||||| Sbjct 46427 GCGTGTGGGCGAGTACTCCAAGGCAGGCGT 46456 >seq43 Length=134600 Score = 132 bits (146), Expect = 7e-25 Identities = 177/245 (72%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| ||| |||||||||||||| |||||||||||| || | | | Sbjct 27567 TCGTACTCCACCTACATCTACAAGGTGCTGCGTCAGGTGCACCCCGAGACGGGT-----A 27621 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || | | | | | |||||||||||||||||||| |||||||||| |||| |||||| Sbjct 27622 TCAGCAAGCGTGGC-ATGTCGATCATGAACTCGTTCATCAACGACATCTTCGAGCGCATC 27680 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | |||||||| ||| |||| | ||||||| ||| | || |||||| Sbjct 27681 GCATCGGAGGCCGGCAAGCTGTCGCGTTACAACAAGAAGTCGACGCTGTCCAGCCGCGAG 27740 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||| || ||||| || || ||| || || || |||| ||||||||| || ||| Sbjct 27741 ATCCAGACGGCTGTGCGTCTCATGCTGCCTGGTGAGCTTGCCAAGCACGCCGTGTCGGAG 27800 Query 725136 GGCAC 725140 ||||| Sbjct 27801 GGCAC 27805 >seq37 Length=145167 Score = 120 bits (132), Expect = 4e-21 Identities = 176/248 (71%), Gaps = 12/248 (5%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| ||| |||||||||||||| |||||||||||| || | | | Sbjct 103354 TCGTACTCTACCTACATCTACAAGGTGCTGCGCCAGGTGCACCCCGAGACGGGT-----A 103408 Query 724956 TCCTCCAACAAGTCC---ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGC 725012 || | |||| | |||||||||||||||||||| |||||||||| |||| ||| Sbjct 103409 TC----AGCAAGCGCGGTATGTCGATCATGAACTCGTTCATCAACGACATCTTCGAGCGC 103464 Query 725013 ATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGC 725072 |||| | |||||||| ||| |||| | ||||||| ||| | || || Sbjct 103465 ATCGCGTCGGAGGCCGGCAAGCTGTCGCGTTACAACAAGAAGTCGACGCTGTCCAGCCGT 103524 Query 725073 GAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCC 725132 ||||||||||| || ||||| || || | | || || ||||||| ||||||||| || Sbjct 103525 GAGATCCAGACTGCTGTGCGTCTCATGCTCCCGGGTGAGCTGGCCAAGCACGCCGTGTCT 103584 Query 725133 GAGGGCAC 725140 || ||||| Sbjct 103585 GAAGGCAC 103592 >seq653 Length=10395 Score = 116 bits (128), Expect = 5e-20 Identities = 197/281 (70%), Gaps = 12/281 (4%) Strand=Plus/Plus Query 1152833 CCGTCGTAGGGCTGCTTGCGCGCGATGATCTCCCACATGACGACGCCAAACGAGTAGACA 1152892 |||||||| || || || || || ||||||||| ||||||| ||| |||||| | ||| Sbjct 4889 CCGTCGTACGGACACTCGCCCGTGACGATCTCCCAGATGACGATGCCGAACGAGAACACA 4948 Query 1152893 TCGGCCTTTTCCGAATACTTTTCGCCGCGCAAGATCTCGGGCGCCGTCCACGCCGGCGTG 1152952 |||||||| |||| ||||| | | || || | || |||||| ||||| | || Sbjct 4949 TCGGCCTTCTCCGTGTACTTCTGGTTGCCCAGCACTTCCGGCGCCATCCACTGCACAGTC 5008 Query 1152953 CCGCA---GCGGGTCATCGT---CGCATTGTCCTGGCGGATGCGGGCAAAGCCAAAGTCG 1153006 ||||| || ||||| || | ||| ||| || || |||| ||||||||| Sbjct 5009 CCGCAATTGCCTGTCATGGTCTGCACATGAGCCT---TGACCCGAGCAAGGCCAAAGTCT 5065 Query 1153007 GCCACCTTGACGGTGAAATTGTCGTCGACGAGCAGGTTGGACGACTTTTGGAGGTCGCGG 1153066 | | |||| | |||| || | ||| || |||| ||||| |||| || |||||| ||| Sbjct 5066 GAAAGTTTGATGTTGAAGTTCTTGTCCACCAGCAAGTTGG--GACTCTT-GAGGTCTCGG 5122 Query 1153067 TGCACGATCGGCCGTTCGCGCCCGTGCAGATAGGCCACGCC 1153107 |||| ||||| ||||| ||||||||| | || ||| Sbjct 5123 TGCAGAATCGGTCGTTCAAAGTGGTGCAGATACGACATGCC 5163 >seq140 Length=66736 Score = 100 bits (110), Expect = 4e-15 Identities = 187/272 (69%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAG 332932 ||||| || |||||||| || ||||| | || || || | | | | || |||| ||| Sbjct 17217 AAGCGTAGAATGGCACAGCGACTCTGGATGGGTTCAATAATCTTGGTAGAATTGTTACAG 17158 Query 332933 GCCAGGGCAAACCGCGTCGTAT-TGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTG 332991 ||||| || ||||| || || || | | | | |||| || || || ||||| || Sbjct 17157 GCCAGAGCGAACCGTGTGGTGGCTGAGAAGATCT-CCATAGTGCGGCGTAGAGCCTGCTG 17099 Query 332992 GGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGG 333051 || || | ||| | |||| |||||||| ||||||| ||| |||||||| || |||| Sbjct 17098 CGCTGCTGCCGTCATCGAGTCCGCCTCGTCCAGGATGACGATTTTGTGGCGTCCAGGCGG 17039 Query 333052 CAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCG 333111 ||| ||| | | |||| ||||| | |||| || ||| | ||| || Sbjct 17038 CAGCGTCACCTTCTGTTGGGCGAACATCTTGATCTTGCTGCGTACAGTGTCGATGCCTCG 16979 Query 333112 CTCGTCCGACGCGTTGAGTTCGAGCACGGCCT 333143 ||||||||||||||||| || ||||| |||| Sbjct 16978 GTCGTCCGACGCGTTGAGCTCCAGCACCGCCT 16947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177626976989420