Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq468 143 3e-29 seq625 111 2e-19 seq328 100 3e-16 >seq468 Length=19833 Score = 143 bits (158), Expect = 3e-29 Identities = 172/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || || | ||| ||||| || || || ||||| || |||||||||||| Sbjct 15396 TTTCCGCCACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCG 15455 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | ||| || ||| || ||||| ||||| || || |||| ||||||||| || ||| Sbjct 15456 CTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGC 15515 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || |||||||| || ||||| ||||| || || || ||| | | |||||| | ||| Sbjct 15516 GGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTCC 15575 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 |||||||| || || || || || || | || || || || || ||||| ||| Sbjct 15576 ACGTCGAGCGTGATAGTCTTGCCAGTCAGTGTCTTCACAAAGATCTGCATCTTG 15629 Score = 140 bits (154), Expect = 3e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| || || || ||||| || ||||||||||||| | ||| || Sbjct 19696 AGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGA 19637 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || || |||| ||||||||| || ||||| |||||||| Sbjct 19636 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCC 19577 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| ||||| || || || ||| | | |||||| | ||||||||||| || Sbjct 19576 TTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTCCACGTCGAGCGTG 19517 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || || | || || || || || ||||| ||| Sbjct 19516 ATAGTCTTGCCAGTCAGTGTCTTCACAAAGATCTGCATCTTG 19475 >seq625 Length=11448 Score = 111 bits (122), Expect = 2e-19 Identities = 143/192 (74%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGT-CGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAA 134582 |||| || |||||||||| || || | ||| | ||| |||||||| ||||| || || Sbjct 2531 CCTTCTGGATGTTGTAGTCCGACAGC-GTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 2589 Query 134583 ATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCG 134642 |||| ||||||||| || || || || || || || || || ||||| || ||||| | Sbjct 2590 ATCAGACGCTGCTGGTCAGGTGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTG 2649 Query 134643 TCCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAAC 134701 | ||||| |||| |||| ||||||||||| || ||||| || || || | || || || Sbjct 2650 T-CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCAC 2708 Query 134702 GAAAATTTGCAT 134713 || || ||||| Sbjct 2709 AAAGATCTGCAT 2720 >seq328 Length=32478 Score = 100 bits (110), Expect = 3e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| || || || ||||| || ||||||||||||| | ||| || Sbjct 130 AGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGA 71 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || || |||| ||||||||| || ||||| |||||||| Sbjct 70 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCC 11 Query 134616 TTTTCTTG 134623 || ||||| Sbjct 10 TTGTCTTG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505386333613200