Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq13 152 7e-32 >seq13 Length=222908 Score = 152 bits (168), Expect = 7e-32 Identities = 357/535 (67%), Gaps = 13/535 (2%) Strand=Plus/Minus Query 39638 CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTT 39697 || ||||| | ||| || | ||||| || || | || |||||||| ||||||||||| Sbjct 46135 CCTTCATCACGACTGATGAGCTCGTTGGAGAAGCTCAGACCAGGCATGAGACCACGCTTC 46076 Query 39698 TTGAGCCAAAATATGGCAGCAAAA-GATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAA 39756 |||||||| || |||| ||||||| || || || |||||||| || || || ||||| || Sbjct 46075 TTGAGCCAGAAGATGG-AGCAAAAGGAGCCCGAGAAGAAGATTCCCTCCACAGCTGCGAA 46017 Query 39757 TGCAACAAGTCTCTCTCCGTA-------ACTTGTATCATTATGTATCCACTTCTGTGCCC 39809 ||| | ||| | ||| ||| |||| || | | ||| || | |||| Sbjct 46016 TGCCAGAAGACGCTCCGGGTATGAGGACACTT---TCGGGTCGCA-CCATCTCAGCGCCC 45961 Query 39810 AATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTT 39869 || || ||||| | ||||| || || || || || ||| | || | | |||| Sbjct 45960 AACTCGCCTTCTTGGTCACACACGGGATGGTCTCAATTGCACGCAGCAGGTGGTCCTTTT 45901 Query 39870 CATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTT 39929 | || || || | || || || || | ||| |||| ||||| |||||||| | Sbjct 45900 CCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCGAGTACACCTCTGAGTGGATGTTCT 45841 Query 39930 CAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAA 39989 |||| || ||||| || ||||| || || | || |||| | |||||| || | || Sbjct 45840 CAATGGCAATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGCACTTGTACTTCATTGCTAA 45781 Query 39990 ATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACAT 40049 | | ||||| || || ||||| || |||||||| |||||||| || ||||| || | Sbjct 45780 AGTTCATGGCCAAGTTCTCGTTCACGATGCCATCACTGGCGGCAAAGAAGGCCAAGACGT 45721 Query 40050 GTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATA 40109 | || || || | || | | ||| | || |||||| |||| || | | | Sbjct 45720 GCTTGATGAAGTGACGCTCGTTGTCTGTGAGGTTTCCCCAGTCCTTGAGGTCGTGTACCA 45661 Query 40110 TATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCA 40164 || | ||||| || ||||| || ||||| ||||| |||||||| | ||| Sbjct 45660 AGTCCAGCTCTTCCGCAGTCCAGAAGCTGGCCTCCGCCTTCTTGTACATCTGCCA 45606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686892400052400