Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq80 129 5e-25 seq13 89.7 4e-13 >seq80 Length=102449 Score = 129 bits (142), Expect = 5e-25 Identities = 313/465 (67%), Gaps = 12/465 (3%) Strand=Plus/Minus Query 40857 AGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAA 40916 ||||| | ||| ||||| || || || |||||||| |||| ||| || |||||||| || Sbjct 13790 AGGGAAGTAGGAGATCTGGGACCAGTGTATGGATTCCAGTGGCGTCACTTTGGAGCCAAG 13731 Query 40917 TATGACAC---TATGTACTCTGATTATACCAATAAAGGAATGGATCAA-TTACAGTGCGT 40972 || ||| |||| | | || || || | ||| |||||||| || | | | || Sbjct 13730 TA---CACGGATATGCATGCAGACTACACTGGACAGGGAGTGGATCAACTTGCTGAG-GT 13675 Query 40973 TATAGATACGATTAAATCCGATCCCGATAG-CCGACGTATAATATTGTGCGCGTGGAACC 41031 || | | | | ||| | ||| | ||| || || | ||| |||||||| | Sbjct 13674 GATCCACAA-ACTGCGCACGAACTCGACCGACCGTCGGATTGTGCTGTCTGCGTGGAATC 13616 Query 41032 CAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTT 41091 | |||| | || |||||| |||| || || || |||| |||||||||||||| Sbjct 13615 CGGCGGATCTCAATGAGATGGCGCTGCCGCCGTGCCACATGTTTTGTCAGTTTTACGTGG 13556 Query 41092 GCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCC 41151 |||| || |||| || || |||| || | || | ||||||||| || || || | Sbjct 13555 CGGATGGCGAGTTGTCGTGCCAGATGTACCAGCGTTCGGCTGACATGGGCCTCGGCGTGC 13496 Query 41152 CGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAA 41211 |||| ||||| || |||||||| || || ||| | | || || || | ||| | Sbjct 13495 CGTTCAACATCGCCAGTTATGCGCTACTGACGCGACTTGTGGCCCAAGTGGCTGGTTTGA 13436 Query 41212 AACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGC 41271 ||||||| |||||| | |||| | || |||| ||| | ||| | || ||| |||||| Sbjct 13435 AACCTGGCGAATTTATCCACATTATTGGCGATGCACACGTATACCTGAACCACGTAGAGC 13376 Query 41272 CGTTAACAGAA-CAACTGACACGAAAACCTAGACCATTTCCAACG 41315 || | ||||| || || |||| | || ||||||| || ||| Sbjct 13375 CGCT-TCAGAAGCAGCTAGCACGCACCCCGCGACCATTCCCCACG 13332 >seq13 Length=222908 Score = 89.7 bits (98), Expect = 4e-13 Identities = 290/444 (65%), Gaps = 11/444 (2%) Strand=Plus/Plus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 || ||||| || ||||| || || || || || || || || || |||| | ||| Sbjct 45723 GTCTTGGCCTTCTTTGCCGCCAGTGATGGCATCGTGAACGAGAACTTGGCCATGAACTTT 45782 Query 43910 GCGCAA-GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGA 43968 |||| ||||| ||| | || || || || || || || || || || |||||||| || Sbjct 45783 A-GCAATGAAGTACAAGTGCCTGAGGCTCGTTGCTTCTACGGCTTCCAGATTGCCATTGA 45841 Query 43969 AAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGA 44028 || || || || || ||||| || || || || ||||||||||| || | || Sbjct 45842 GAACATCCACTCAGAGGTGTACTCGCTGCTCATTGACACGTACATCAAGGACGCTGTGGA 45901 Query 44029 GAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACT- 44087 ||| | | || | ||| || || || | || | | | | || ||| || | Sbjct 45902 AAAGGACCACCTGCTGCGTGCAATTGAGACCATCCC-GTGTGTGACCAAGAAGGCGAGTT 45960 Query 44088 GGGCCCTTAAATGGATAAATTCAAATGATTCTTTT-----GGAGAACGACTTGTCGCGTT 44142 |||| || | |||| | | || | || | |||| || ||| | || || Sbjct 45961 GGGCGCTGAGATGGTGCGACCCGAAAGTGTCCTCATACCCGGAG--CGTCTTCTGGCATT 46018 Query 44143 TGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAA 44202 |||| |||||| || || ||||| || || || ||| |||| || ||| | ||||| Sbjct 46019 CGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTTCTGGCTCAAGAA 46078 Query 44203 ACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTT 44262 || ||| | |||||||| ||| || || || ||| | || |||||||||||||| | Sbjct 46079 GCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAACGAGCTCATCAGTCGTGATGAAGGTAT 46138 Query 44263 ACATTGCGATTTTGCTTGCTTGTT 44286 || || |||||||| |||| Sbjct 46139 GCACACAGACTTTGCTTGTCTGTT 46162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397446747969550